Pairwise Alignments

Query, 971 a.a., Excinuclease ABC subunit A from Sphingobium sp. HT1-2

Subject, 838 a.a., excinuclease ABC subunit A from Pseudomonas simiae WCS417

 Score =  526 bits (1354), Expect = e-153
 Identities = 298/703 (42%), Positives = 417/703 (59%), Gaps = 36/703 (5%)

Query: 289 FSFNAPMGACPACDGLGERQEFDPELVVPNEALSLKKGAVVPWAKSNPPSPYYMQVLGSL 348
           FS N P GACP C GLG   E    L+VP+ +L++++ AV  W     P  +  Q    +
Sbjct: 144 FSPNLPQGACPQCHGLGRVYEVTEALMVPDPSLTIRQRAVASW-----PLAWQGQNQRDI 198

Query: 349 AKEFGFSLDTPWAELPGEVK--LIILHGTGGKPVTLRFVDGKK----SYEVEKPFEGVIG 402
               G+ +D PW +LP + +  ++    T   PV   F   +       ++E  ++G   
Sbjct: 199 LVTLGYDVDIPWRDLPKKQRDWILFTEETPTVPVYAGFTPEQTRDALKRKLEPSYQGTFM 258

Query: 403 NLNRRL----AQTESAWMREELSKYQTAMPCETCHGARLKPEALAVKIAGEDISVSTRRS 458
              R +    A T+SA M++ +S++     C  C G RL   AL+VK AG DI   ++ S
Sbjct: 259 GARRYILHTFAHTQSALMKKRVSQFMQGSACPLCEGKRLTKAALSVKFAGVDIGELSQLS 318

Query: 459 VV---DALAFFTAMPDA--LNDQQNQIARAILKEIVERLGFLNNVGLDYLNLDRTSGTLS 513
           +    + L    A  D   L+ ++   A+ I ++++ER+  L  +GL YL+L+R++ TLS
Sbjct: 319 LAQLAELLRPVAAGQDTMKLSVEKRLAAQRIAQDLLERVSTLTELGLGYLSLERSTPTLS 378

Query: 514 GGESQRIRLASQIGSGLSGVLYVLDEPSIGLHQRDNDRLLVTLKRLRDLGNSVIVVEHDE 573
            GE QR+RLA+Q+GS L GV+YVLDEPS GLH  D + L   L RL+  GNS+ VVEHD 
Sbjct: 379 SGELQRLRLATQLGSQLFGVIYVLDEPSAGLHPADGEALFTALDRLKAAGNSLFVVEHDL 438

Query: 574 DAIRAADYIVDMGPGAGVHGGTIVAQGTLPELLAHKDSLTADYLNGTRRIEVPAKRRKGS 633
           + +R AD+++D+GP AG HGG ++  G    L   + S T  YL   +R+    +RR  +
Sbjct: 439 ETMRRADWLIDVGPAAGEHGGQVLYSGPPAGLAQVQASQTRAYLFAEKRVS-KQERRDPT 497

Query: 634 GKKLTVHNARANNLTGVTASIPLGTFTCITGVSGSGKSSFTIDTLYAASARTL------- 686
           G  LT+     NNL  +    PLG FT +TG+SGSGKSS     L    +  L       
Sbjct: 498 GW-LTLQGVTRNNLKDLNVDFPLGCFTAVTGISGSGKSSLVSQALLELVSAGLGRVVEND 556

Query: 687 ------NGARIVAGPHDKITGLENCDKVIDIDQSPIGRTPRSNPATYTGAFTNIRDWFAG 740
                 + A   +G H    GLE+  +++ +DQ PIGRTPRSN ATYTG F N+R  FA 
Sbjct: 557 EEPSLEDDAPQTSGGHIH-AGLEHIRRLVQVDQKPIGRTPRSNLATYTGLFDNVRKLFAA 615

Query: 741 LPEAQARGYKPGRFSFNVKGGRCEACQGDGVLKIEMHFLPDVYVTCDVCHGARYNRETLE 800
            P A+ R Y  G+FSFNV  GRC  C+G+G + +E+ F+P VY  C  CHGARYN ETL 
Sbjct: 616 TPAAKKRHYDAGQFSFNVAKGRCPNCEGEGFVSVELLFMPSVYAPCPTCHGARYNPETLA 675

Query: 801 VKFKGMSIADILDMTVEDAVEFFKAVPPIRDKMAMLAEVGLGYIKVGQQATTLSGGEAQR 860
           VK++G++IA +L +TVE AVE F   P +   + +L ++GLGY+++GQ AT LSGGEAQR
Sbjct: 676 VKWQGLTIAQVLGLTVEQAVEVFAEQPSVLRSLQVLRDIGLGYLRLGQPATELSGGEAQR 735

Query: 861 VKLAKELSRRATGNTLYILDEPTTGLHFEDVRKLLEVLHALVEQGNSVVVIEHNLDVIKT 920
           +KLA EL R A G TLY+LDEPTTGLH  DV +LL  L+ LVE G++VVV+EH + V+  
Sbjct: 736 IKLATELQRNARGATLYVLDEPTTGLHPRDVDRLLSQLNHLVEAGHTVVVVEHEMRVVAQ 795

Query: 921 ADYIIDMGPEGGVKGGEVVAQGTPEQVVKEKRSFTGRYLAPLL 963
           +D++ID+GP  G  GG VVA GTP++V K K+S T  +LA  L
Sbjct: 796 SDWVIDIGPGAGDLGGAVVASGTPQKVAKSKKSRTAAFLAKAL 838



 Score =  136 bits (343), Expect = 5e-36
 Identities = 66/124 (53%), Positives = 96/124 (77%), Gaps = 3/124 (2%)

Query: 6   ISVRGAREHNLKGVDVDLPRDSLIVITGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQ 65
           + VRGAREHNL+ VDVD+PRD+L+V TG+SGSGKSSLAF T+YAE QRRY ES++ YAR+
Sbjct: 18  VRVRGAREHNLRNVDVDIPRDALVVFTGVSGSGKSSLAFSTVYAEAQRRYFESVAPYARR 77

Query: 66  FLEMMQKPDVEHIEGLSPAISIEQKTTSRNPRSTVATVTEIYDYMRLLWARVGIPYSPAT 125
            ++ +  PDV+ IEGL PA++++Q+  + + RS+V +VT +   +R+L++R G  Y P  
Sbjct: 78  LIDQVGVPDVDSIEGLPPAVALQQQRGTPSARSSVGSVTTLSSLIRMLYSRAG-SYPP-- 134

Query: 126 GEPI 129
           G+P+
Sbjct: 135 GQPM 138



 Score = 61.2 bits (147), Expect = 3e-13
 Identities = 43/118 (36%), Positives = 63/118 (53%), Gaps = 11/118 (9%)

Query: 6   ISVRGAREHNLKGVDVDLPRDSLIVITGLSGSGKSSL---AFDTIYAEGQRRYVE----- 57
           ++++G   +NLK ++VD P      +TG+SGSGKSSL   A   + + G  R VE     
Sbjct: 500 LTLQGVTRNNLKDLNVDFPLGCFTAVTGISGSGKSSLVSQALLELVSAGLGRVVENDEEP 559

Query: 58  SLSAYARQFLEMMQKPDVEHIEGLSPAISIEQKTTSRNPRSTVATVTEIYDYMRLLWA 115
           SL   A Q         +EHI  L   + ++QK   R PRS +AT T ++D +R L+A
Sbjct: 560 SLEDDAPQTSGGHIHAGLEHIRRL---VQVDQKPIGRTPRSNLATYTGLFDNVRKLFA 614



 Score = 50.8 bits (120), Expect = 4e-10
 Identities = 43/142 (30%), Positives = 59/142 (41%), Gaps = 11/142 (7%)

Query: 639 VHNARANNLTGVTASIPLGTFTCITGVSGSGKSSFTIDTLYA-ASARTLNGARIVAGPHD 697
           V  AR +NL  V   IP       TGVSGSGKSS    T+YA A  R        A    
Sbjct: 20  VRGAREHNLRNVDVDIPRDALVVFTGVSGSGKSSLAFSTVYAEAQRRYFESVAPYARRLI 79

Query: 698 KITGLENCDKVIDIDQSPIGRTPRSNPA--TYTGAFTNIRDWFAGLPEAQARGYKPGR-- 753
              G+ + D +  +  +   +  R  P+  +  G+ T +      L  ++A  Y PG+  
Sbjct: 80  DQVGVPDVDSIEGLPPAVALQQQRGTPSARSSVGSVTTLSSLIRML-YSRAGSYPPGQPM 138

Query: 754 -----FSFNVKGGRCEACQGDG 770
                FS N+  G C  C G G
Sbjct: 139 LYAEDFSPNLPQGACPQCHGLG 160