Pairwise Alignments
Query, 971 a.a., Excinuclease ABC subunit A from Sphingobium sp. HT1-2
Subject, 1947 a.a., Excinuclease ABC subunit A, dimeric form from Variovorax sp. SCN45
Score = 535 bits (1377), Expect = e-155
Identities = 369/1049 (35%), Positives = 532/1049 (50%), Gaps = 129/1049 (12%)
Query: 1 MSLTHISVRGAREHNLKGVDVDLPRDSLIVITGLSGSGKSSLAFDTIYAEGQRRYVESLS 60
M+ I +RGAR+HNL+ +D+D+ + V+TG SGSGKSSL FDT+YAEGQRRYVE+ S
Sbjct: 1 MTQGSIRIRGARQHNLQNLDLDIRTGEMTVVTGPSGSGKSSLVFDTLYAEGQRRYVETFS 60
Query: 61 AYARQFLEMMQKPDVEHIEGLSPAISIEQKTTSRNPRSTVATVTEIYDYMRLLWARVGIP 120
AYARQFL+ M KP V+ +EG+ PAI+I+Q R+ RSTV T+TE+ D+++LL+AR
Sbjct: 61 AYARQFLDRMDKPAVDKVEGVPPAIAIDQTNPVRSSRSTVGTMTELNDHLKLLFARAADL 120
Query: 121 YSPATGEPI---SAQTVSQMVDRVMLLPEGTRFYLLAPVVRGRKGEYRKELAEWQKA-GY 176
+ T P+ S ++ + R + P V +E+ +W A G+
Sbjct: 121 FDRETALPVRHDSPDSIYAQIAERAAAAGDPRLVVTFP-VELPASTTAEEVTQWLSASGF 179
Query: 177 TRVRIDGELYLIEDAPALDKKYKHDIEVVVDRLAVNADMATRLADSFEQALKLADGLAFV 236
TRV+ + E+ P +K ++VV DR ++ +R+ ++ E ALK G V
Sbjct: 180 TRVQSEREV----ATPTGPRKV---LDVVADRFRASSAERSRVVEAIEVALKRGSGRVTV 232
Query: 237 DLAEDVVPGREDKAQSAGKMKNAGIPANRIVFSEKFACPVSGFTIPEIEPRLFSFNAPMG 296
+ G +NA P + FS CP S + P +FSFN+ +G
Sbjct: 233 --------------HATGAEENA--PTDVWKFSTGLHCPESDIRYADPIPSMFSFNSAVG 276
Query: 297 ACPACDGLGERQEFDPELVVPNEALSLKKGAVVPWAKSNPPSPYYMQVLGSL---AKEFG 353
AC C G G D LV+PN+ L+L+ GA+ +P + + L A+ G
Sbjct: 277 ACDTCRGFGRVIGVDLGLVIPNDKLTLRAGAI-----KTIQTPAWKEAQDDLMRHAETAG 331
Query: 354 FSLDTPWAELPGEVKLIILHGTGGKPVTLRFVDGKKSYEVEKPFEGVIGNLNRRLAQTES 413
DTPW +L E K ++ GT K K + GV ++
Sbjct: 332 IPRDTPWNKLTDEQKHWVIEGT----------PNYKEGNWNKQWYGVRRFFAYLESKAYK 381
Query: 414 AWMREELSKYQTAMPCETCHGARLKPEALAVKIAGE---DISVSTRRSVVDALAFFT--- 467
+R LSKY++ C TC GARLK ++L +I + D + + + A +T
Sbjct: 382 MHIRVLLSKYRSYTQCPTCSGARLKLDSLIWRIGSKEDADAVLPPEKRFMPTGAKWTRAQ 441
Query: 468 --AMPDALNDQQNQIARAILKEIVERLG-------------------FLNNVGLDYLNLD 506
A+P + L++ +R+G N + NL
Sbjct: 442 LEALPGLCLHDLMLLPIERLRKFFDRMGQGMAPSLAGGGQAALASPAASNEAESPHPNLP 501
Query: 507 RTSGTLSGGESQRIRLA-SQIGSGLS-----GVLYV-LDEPSIGLHQRDNDRLLVTLKRL 559
GE+Q ++L +I + L G+ Y+ LD S L + R+ +T
Sbjct: 502 PAGEGARQGEAQALKLLFEEITTRLRYLHDVGIGYLTLDRQSRTLSGGEVQRINLTTALG 561
Query: 560 RDLGNSVIVVE------HDEDAIR--------------------------AADYIVDMGP 587
L N++ V++ H D R AAD ++DMGP
Sbjct: 562 TSLVNTLFVLDEPSIGLHPRDMNRITEAMLRLRDAGNTLVVVEHDPAVMLAADRVIDMGP 621
Query: 588 GAGVHGGTIVAQGTLPELLAHKDSLTADYLNGTRRIEVPAKRRKGSG-KKLTVHNARANN 646
G G GG IV GT + L D+LT YL G ++I + KR +L + R +N
Sbjct: 622 GPGARGGQIVFDGTTDQ-LRDADTLTGQYLGGRKKIGMGFKRLVSENTHRLILEGVREHN 680
Query: 647 LTGVTASIPLGTFTCITGVSGSGKSSFTIDTLYAASARTLNGARIVAGPHDKITGLENCD 706
L +T PL C+TGVSGSGKS+ D L A R A G HD++ G ++
Sbjct: 681 LKNITVDFPLARLVCVTGVSGSGKSTLIQDVLAPALMRHFGKATETPGAHDRMLGADHLG 740
Query: 707 KVIDIDQSPIGRTPRSNPATYTGAFTNIRDWFAGLPEAQARGYKPGRFSFNVKGGRCEAC 766
V+ +DQSPIG+T RSNPA+Y GA+ IR+ FA ++ RGY +FSFN GRC C
Sbjct: 741 DVVFVDQSPIGKTARSNPASYVGAWDAIREIFATAALSRQRGYTASKFSFNSGDGRCPTC 800
Query: 767 QGDGVLKIEMHFLPDVYVTCDVCHGARYNRETLEV----KFKGMSIADILDMTVEDAVEF 822
G G +EM FL DVY+ C C G RY E LEV K K ++AD+LD+TV +A
Sbjct: 801 GGSGFEHVEMQFLSDVYLRCPDCDGKRYRPEILEVRVERKGKSYNVADVLDLTVAEAAAV 860
Query: 823 FKAVPPIRDKMAMLAEVGLGYIKVGQQATTLSGGEAQRVKLAKELSRRATG--------- 873
F+A + + +++VGL Y+K+GQ TLSGGEAQR+KLA L+ A G
Sbjct: 861 FEADRDVLRVLQPISDVGLDYVKLGQPVPTLSGGEAQRLKLAGFLAEAAKGATASKQSVA 920
Query: 874 --NTLYILDEPTTGLHFEDVRKLLEVLHALVEQGNSVVVIEHNLDVIKTADYIIDMGPEG 931
TL++ DEPTTGLHF+D+ +L+ L L+E G+S++VIEHNLDVI+ +D++ID+GPEG
Sbjct: 921 RKGTLFLFDEPTTGLHFDDIARLMRALRKLLEAGHSLIVIEHNLDVIRASDWLIDLGPEG 980
Query: 932 GVKGGEVVAQGTPEQVVKEKRSFTGRYLA 960
G GG+VVA+GTPEQ+ + + S TG LA
Sbjct: 981 GEGGGQVVAEGTPEQLRENRASLTGAALA 1009
Score = 502 bits (1293), Expect = e-146
Identities = 283/574 (49%), Positives = 364/574 (63%), Gaps = 43/574 (7%)
Query: 429 CETCHGARLKPEALAVKIA--------GEDISVSTRRSVVDALAFFTAMPDALNDQQNQI 480
C TC G RL A AV G I+ R SV + +F + AL ++ +I
Sbjct: 1376 CPTCEGTRLNATARAVSFGASLANGSGGIGITELARMSVTEVRQWFEGL--ALTGREAEI 1433
Query: 481 ARAILKEIVERLGFLNNVGLDYLNLDRTSGTLSGGESQRIRLASQIGSGLSGVLYVLDEP 540
AR ++ EI RL FL VGL YL LDR + TLSGGE+QRIRLA+Q+GS L GV YVLDEP
Sbjct: 1434 ARDLVPEIKSRLEFLEEVGLGYLTLDRGAPTLSGGEAQRIRLAAQLGSNLQGVCYVLDEP 1493
Query: 541 SIGLHQRDNDRLLVTLKRLRDLGNSVIVVEHDEDAIRAADYIVDMGPGAGVHGGTIVAQG 600
+IGLH RDN LL L +L + GN+++VVEHDED IR AD+I+D+GP AG GG +VA+G
Sbjct: 1494 TIGLHARDNQILLNALHKLGEKGNTLVVVEHDEDTIRRADHIIDIGPSAGKRGGRLVAEG 1553
Query: 601 TLPELLAHKDSLTADYLNGT--------RRIEVPAKRRKGSGKKLTVHNARANNLTGVTA 652
T+ ++ DS T YL R I P + + +G+ LTVH A +NL +TA
Sbjct: 1554 TVADIQNAGDSQTGRYLRDAIRHPLQARRSIPSPDPQAEDNGEWLTVHGADLHNLQDLTA 1613
Query: 653 SIPLGTFTCITGVSGSGKSSFTIDTLYAASARTLNGARIVAGPHD--------------K 698
++PL +TGVSGSGKS+ D L A S + + R+ D K
Sbjct: 1614 TLPLHRLVVVTGVSGSGKSTLARDVLLA-SVQGIVVQRMTKAGRDADAAGKRPAWAGCRK 1672
Query: 699 ITGLENCDKVIDIDQSPIGRTPRSNPATYTGAFTNIRDWFAGLPEAQARGYKPGRFSFNV 758
+ G E D+V+++DQ+PIG+TPRS PATY G + IR FA EA+ARGY P RFSFN
Sbjct: 1673 VDGYETIDRVLEVDQTPIGKTPRSCPATYIGFWDTIRKLFADTLEAKARGYGPARFSFNT 1732
Query: 759 KGGRCEACQGDGVLKIEMHFLPDVYVTCDVCHGARYNRETLEVKFKGMSIADILDMTVED 818
GRC C+G GV IEM FLPDV V C+VCHGAR+N ETL V ++G SI D+L M V++
Sbjct: 1733 GEGRCPGCEGAGVRTIEMSFLPDVKVPCEVCHGARFNPETLAVSWRGKSIGDVLKMEVDE 1792
Query: 819 AVEFFKAVPPIRDKMAMLAEVGLGYIKVGQQATTLSGGEAQRVKLAKELSR--------- 869
AVEFF ++P I + +L +VGLGY+ +GQ + TLSGGEAQR+KL ELS+
Sbjct: 1793 AVEFFASMPNIAHPLQLLKDVGLGYLTLGQPSPTLSGGEAQRIKLVTELSKVRDDITRRG 1852
Query: 870 RATGNTLYILDEPTTGLHFEDVRKLLEVLHALVEQGNSVVVIEHNLDVIKTADYIIDMGP 929
+ +TLY+LDEPT GLH DV KL+ VLH LV G+SVVVIEH+LD+I AD+IID+GP
Sbjct: 1853 QKAPHTLYVLDEPTVGLHMADVEKLIHVLHRLVNGGHSVVVIEHDLDLIAEADWIIDLGP 1912
Query: 930 EGGVKGGEVVAQGTPEQVVKEKRSFTGRYLAPLL 963
EGG GG +VA PE+VV+ + TG LAP+L
Sbjct: 1913 EGGNAGGRIVAAAPPEEVVR-LGTHTGVALAPVL 1945
Score = 207 bits (528), Expect = 4e-57
Identities = 120/312 (38%), Positives = 182/312 (58%), Gaps = 10/312 (3%)
Query: 6 ISVRGAREHNLKGVDVDLPRDSLIVITGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQ 65
+ + AREHNLK + VD+PR V+TG+SGSGKS+LAFD ++ EGQRRY+ESL+AYAR
Sbjct: 1043 VQIVNAREHNLKNLSVDIPRGKFSVVTGVSGSGKSTLAFDILFNEGQRRYLESLNAYARS 1102
Query: 66 FLEMMQKPDVEHIEGLSPAISIEQKTTSRNPRSTVATVTEIYDYMRLLWARVGIPYSPAT 125
++ +P+V+ + G+ P ++IEQ+ + +STV T TE++ ++RLL+ ++GI +
Sbjct: 1103 IVQPAGRPEVDAVYGIPPTVAIEQRLSRGGRKSTVGTTTEVWHFLRLLYVKLGIQHCIHD 1162
Query: 126 GEPISAQTVSQMVDRVMLLPEGTRFYLLAPVVRGRKGEYRKELAEWQK-AGYTRVRIDGE 184
G + QT + ++M +G LLAP+V RKG Y ELA+W + G+T +R+DG+
Sbjct: 1163 GAAVQPQTPDSIAAQLMRNFKGQHIGLLAPLVSNRKGVY-TELADWARPRGFTHLRVDGD 1221
Query: 185 LYLIEDAPALDKKYKHDIEVVVDRLAVNADMATRLADSFEQALKLADGLAFVDLAEDVVP 244
P +D+ +H IE+ V L V T L ++ +AL+ G+ V D +
Sbjct: 1222 FLPTTGFPRIDRFKEHSIELPVASLDVLPSKETELREALTKALEHGKGVVHVLSELDGL- 1280
Query: 245 GREDKAQSAGKMKNAGIPANRI-VFSEKFACPVSGFTIPEIEPRLFSFNAPMGACPACDG 303
+A + AGI R+ VFS ACPV + E++PRLFS+N+ G CP C G
Sbjct: 1281 ----RAAMMAGVSAAGI--GRVHVFSTLRACPVCSTSYAELDPRLFSYNSKHGWCPDCVG 1334
Query: 304 LGERQEFDPELV 315
G + D V
Sbjct: 1335 TGVKLSKDQRKV 1346
Score = 152 bits (383), Expect = 3e-40
Identities = 99/284 (34%), Positives = 148/284 (52%), Gaps = 41/284 (14%)
Query: 429 CETCHGARLKPEALAVKIAGEDISVSTRRSVVDALAFFTAMPDALNDQQNQIARAILKEI 488
C C G R +PE L V++ + S + V D L A A+ + + R +
Sbjct: 820 CPDCDGKRYRPEILEVRVERKGKSYN----VADVLDLTVAEAAAVFEADRDVLRVLQP-- 873
Query: 489 VERLGFLNNVGLDYLNLDRTSGTLSGGESQRIRLASQIGSGLSGV------------LYV 536
+++VGLDY+ L + TLSGGE+QR++LA + G L++
Sbjct: 874 ------ISDVGLDYVKLGQPVPTLSGGEAQRLKLAGFLAEAAKGATASKQSVARKGTLFL 927
Query: 537 LDEPSIGLHQRDNDRLLVTLKRLRDLGNSVIVVEHDEDAIRAADYIVDMGPGAGVHGGTI 596
DEP+ GLH D RL+ L++L + G+S+IV+EH+ D IRA+D+++D+GP G GG +
Sbjct: 928 FDEPTTGLHFDDIARLMRALRKLLEAGHSLIVIEHNLDVIRASDWLIDLGPEGGEGGGQV 987
Query: 597 VAQGTLPELLAHKDSLT----ADYL------------NGTRRIEVPAKRRKGSGKKLTVH 640
VA+GT +L ++ SLT ADY RR AK+ GS + +
Sbjct: 988 VAEGTPEQLRENRASLTGAALADYELAIGPDAYKVAERAARRYIANAKKAPGSDA-VQIV 1046
Query: 641 NARANNLTGVTASIPLGTFTCITGVSGSGKSSFTIDTLYAASAR 684
NAR +NL ++ IP G F+ +TGVSGSGKS+ D L+ R
Sbjct: 1047 NAREHNLKNLSVDIPRGKFSVVTGVSGSGKSTLAFDILFNEGQR 1090
Score = 149 bits (375), Expect = 2e-39
Identities = 95/257 (36%), Positives = 129/257 (50%), Gaps = 51/257 (19%)
Query: 751 PGRFSFNVKGGRCEACQGDGV--------------------------LKIEMHFLPDVYV 784
P FS+N K G C C G GV + E+ L DV
Sbjct: 1317 PRLFSYNSKHGWCPDCVGTGVKLSKDQRKVFDDSVRDDDNKGREQTFAEPEVEDLADV-- 1374
Query: 785 TCDVCHGARYNRETLEVKF--------KGMSIADILDMTVEDAVEFFKA----------- 825
C C G R N V F G+ I ++ M+V + ++F+
Sbjct: 1375 ACPTCEGTRLNATARAVSFGASLANGSGGIGITELARMSVTEVRQWFEGLALTGREAEIA 1434
Query: 826 ---VPPIRDKMAMLAEVGLGYIKVGQQATTLSGGEAQRVKLAKELSRRATGNTLYILDEP 882
VP I+ ++ L EVGLGY+ + + A TLSGGEAQR++LA +L G Y+LDEP
Sbjct: 1435 RDLVPEIKSRLEFLEEVGLGYLTLDRGAPTLSGGEAQRIRLAAQLGSNLQG-VCYVLDEP 1493
Query: 883 TTGLHFEDVRKLLEVLHALVEQGNSVVVIEHNLDVIKTADYIIDMGPEGGVKGGEVVAQG 942
T GLH D + LL LH L E+GN++VV+EH+ D I+ AD+IID+GP G +GG +VA+G
Sbjct: 1494 TIGLHARDNQILLNALHKLGEKGNTLVVVEHDEDTIRRADHIIDIGPSAGKRGGRLVAEG 1553
Query: 943 TPEQVVKEKRSFTGRYL 959
T + S TGRYL
Sbjct: 1554 TVADIQNAGDSQTGRYL 1570
Score = 137 bits (344), Expect = 9e-36
Identities = 79/190 (41%), Positives = 107/190 (56%), Gaps = 26/190 (13%)
Query: 427 MPCETCHGARLKPEALAVKIAGEDISVSTRRSVVDALAFFTAMPDALNDQQNQIARAILK 486
+PCE CHGAR PE LAV G+ I + V +A+ FF +MP+
Sbjct: 1758 VPCEVCHGARFNPETLAVSWRGKSIGDVLKMEVDEAVEFFASMPN--------------- 1802
Query: 487 EIVERLGFLNNVGLDYLNLDRTSGTLSGGESQRIRLASQI----------GSGLSGVLYV 536
I L L +VGL YL L + S TLSGGE+QRI+L +++ G LYV
Sbjct: 1803 -IAHPLQLLKDVGLGYLTLGQPSPTLSGGEAQRIKLVTELSKVRDDITRRGQKAPHTLYV 1861
Query: 537 LDEPSIGLHQRDNDRLLVTLKRLRDLGNSVIVVEHDEDAIRAADYIVDMGPGAGVHGGTI 596
LDEP++GLH D ++L+ L RL + G+SV+V+EHD D I AD+I+D+GP G GG I
Sbjct: 1862 LDEPTVGLHMADVEKLIHVLHRLVNGGHSVVVIEHDLDLIAEADWIIDLGPEGGNAGGRI 1921
Query: 597 VAQGTLPELL 606
VA E++
Sbjct: 1922 VAAAPPEEVV 1931
Score = 62.0 bits (149), Expect = 4e-13
Identities = 38/116 (32%), Positives = 61/116 (52%), Gaps = 6/116 (5%)
Query: 6 ISVRGAREHNLKGVDVDLPRDSLIVITGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQ 65
++V GA HNL+ + LP L+V+TG+SGSGKS+LA D + A Q V+ ++ R
Sbjct: 1598 LTVHGADLHNLQDLTATLPLHRLVVVTGVSGSGKSTLARDVLLASVQGIVVQRMTKAGRD 1657
Query: 66 FLEMMQKP------DVEHIEGLSPAISIEQKTTSRNPRSTVATVTEIYDYMRLLWA 115
++P V+ E + + ++Q + PRS AT +D +R L+A
Sbjct: 1658 ADAAGKRPAWAGCRKVDGYETIDRVLEVDQTPIGKTPRSCPATYIGFWDTIRKLFA 1713
Score = 34.3 bits (77), Expect = 8e-05
Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Query: 286 PRLFSFNAPMGACPACDGLGER---QEFDPELVVPNE 319
P FSFN G CP C+G G R F P++ VP E
Sbjct: 1725 PARFSFNTGEGRCPGCEGAGVRTIEMSFLPDVKVPCE 1761