Pairwise Alignments

Query, 758 a.a., ATP-dependent DNA helicase UvrD/PcrA (EC 3.6.4.12) from Sphingobium sp. HT1-2

Subject, 669 a.a., helicase a single-stranded DNA dependent ATPase from Pseudomonas putida KT2440

 Score =  388 bits (997), Expect = e-112
 Identities = 234/645 (36%), Positives = 357/645 (55%), Gaps = 31/645 (4%)

Query: 17  LNEPQREAVLTTEGPVLVLAGAGTGKTAALTARLAHLVATQRAWPSEILAVTFTNKAARE 76
           LN  Q+EA     GP+LVLAGAG+GKT+ +T ++AHL+         I+A+TFTNKAARE
Sbjct: 4   LNPRQQEARDYVGGPLLVLAGAGSGKTSVITRKIAHLIQNCGIRAQYIVAMTFTNKAARE 63

Query: 77  MRERVGRMIGPAVEGMPWLGTFHAIAAKMLRRHAELVGLQSNFTILDTDDQLRLMKQLIQ 136
           M+ERV  ++ P       + TFH +   ++R+  E +G +  F+I D  D   L+  ++Q
Sbjct: 64  MKERVATLLRPGEGRGLTVCTFHNLGLNIIRKEHERLGYKPGFSIFDESDIKALLSDIMQ 123

Query: 137 AE-----GIDEKRWPARQLAGLIDQWKNKGLTPEEVGAGEAEGYAHGKGQKLYAAYQARL 191
            E     GIDE       +  +I  WKN  + P E    +A          +Y  YQ  L
Sbjct: 124 KEYSGDDGIDE-------IKNMIGAWKNDLVLPPEA-LEKARNPREQTAAIVYTHYQRTL 175

Query: 192 REVNACDFGDLLLHSLTILKRHRDVLEQYQQRFKYIMVDEYQDTNSSQYLWLRLLAQTRK 251
           +  NA DF DL+L  + + + H +VLE++Q R +Y++VDEYQDTN+SQYL +++L   R 
Sbjct: 176 KAFNAVDFDDLILQPVKLFQEHPEVLERWQNRVRYLLVDEYQDTNASQYLLVKMLIGMRN 235

Query: 252 NICCVGDDDQSIYSWRGAEVANILRFEKDFPGAVIVRLEQNYRSTPHILGAASGVIAENG 311
               VGDDDQSIY+WRGA   N++  ++D+P   IV LEQNYRST  IL  A+ +IA N 
Sbjct: 236 QFTVVGDDDQSIYAWRGARPENLMLLKEDYPSLKIVMLEQNYRSTSRILRCANVLIANNP 295

Query: 312 NRLGKTLWTDIDVGEKVRVLGVWDGPEEARRVGDEIEAI-ARAGGSLDEVAILVRAQHQT 370
           +   K LW+++ VG+++RV+   +   EA RV  EI  +  R      + AIL R  +Q 
Sbjct: 296 HAFEKQLWSEMGVGDEIRVIRCKNEEAEAERVAMEILTLHLRTNRPYSDFAILYRGNYQA 355

Query: 371 REFEDRFIQIGLPYRIVGGFRFYERAEIRDALAYLRLVNQPADDLAFERIVNVPKRGLGD 430
           +  E +     +PYR+ GG  F+ R E++D +AYLRL+  P DD A+ R++NVP+R +G 
Sbjct: 356 KLIELKLQHHQVPYRLSGGNSFFGRQEVKDLMAYLRLLVNPDDDNAYLRVINVPRREIGS 415

Query: 431 KAVEKLHRLARAEGIPLALAAARILDTDELTPQARRSLGAFIGDLARWRDRAAQLPHAEL 490
             +EKL   A   GI +  A+  +   + L  +    L  F   L   R + A       
Sbjct: 416 TTLEKLGNYATERGISMYAASEELGLGEHLDARYTERLQRFKHWLDGVRHKVALEDPIAA 475

Query: 491 ARQILDESGYTATLQAERSTESAG--RLENLSELTRAMEE------------YETLGAFL 536
             +++ +  Y   ++ + +++ A   R+ N+  L  A++              + +G  +
Sbjct: 476 LHEMIRDIDYENWIRQQTASDKAAEFRISNVWFLVEALKNTLEKDEEGDMTIEDAIGKLV 535

Query: 537 EHVSLVMDNEAQQDEQKLTIMTIHAAKGLEFDNVFLAGWEEGIFPSQRALDEGGLNSLEE 596
               L    E +++ + + +MT+HA+KGLEF  VF+ G EE I P + +++    +++EE
Sbjct: 536 LRDMLERQQEEEENAEGVQMMTLHASKGLEFPYVFIMGMEEEILPHRSSIE---ADTIEE 592

Query: 597 ERRLAYVAITRARKRCTILHAANRRIYGQWTSSIPSRFVGELPPE 641
           ERRLAYV ITRAR+      AA R+ YG+     PSRF+ ELPP+
Sbjct: 593 ERRLAYVGITRARQTLAFTFAAKRKQYGEIIDCTPSRFLDELPPD 637