Pairwise Alignments

Query, 799 a.a., hypothetical protein from Sphingobium sp. HT1-2

Subject, 397 a.a., carnitine dehydratase from Pseudomonas simiae WCS417

 Score =  155 bits (392), Expect = 4e-42
 Identities = 115/396 (29%), Positives = 180/396 (45%), Gaps = 16/396 (4%)

Query: 396 PLDGIKVVDFSSFFAVGFGGRLLSDLGADVIKVETP-DGDQMRPLPDCFDAAQ------- 447
           PL GIKVV+  +  A  F  R++++ GA+VIK+E    GD +R      +          
Sbjct: 4   PLSGIKVVEIGTLIAAPFAARMMAEFGAEVIKIEAMGQGDPLRKWRKLHEGTSLWWYLQS 63

Query: 448 RGKRDIVLNLKQPEALEAALKLVAEADVVTHNLRPGKADKLGIGYEALSKINPRLLYVYL 507
           R K+ + L+LK PE L+   +L+ +ADV+  NLRPG  +KLG+G++ L  +NP+L  V +
Sbjct: 64  RNKKSLALDLKSPEGLDLIKQLLGDADVLIENLRPGGLEKLGLGWDVLHALNPKLTLVRI 123

Query: 508 PGYGSKGPKSLLKSFAPLVSGWTGLLYEGGGAGNPPTRSVFGNEDYNNGFLGAAGILMGL 567
            GYG  GP      F  +     G+ Y  G   +PP R      D      G  G LM L
Sbjct: 124 SGYGQTGPYRDRPGFGAIGEAMGGIRYTTGNPDSPPARVGVSLGDSLASLHGVIGALMSL 183

Query: 568 ER-RAISGVGDYMEIPQLHSSLWTTSEHFLDADKQVVYGFRLDKDQAGYNALDRLYRTSD 626
            R +   G G  +++  L  S++   E  +     + +            A    Y T+D
Sbjct: 184 LRVKTGQGDGQIVDV-SLAESVFNLMESLVPEYDMLGHVRERSGGALPGIAPSNTYLTAD 242

Query: 627 G-WICIACRQDGRFAALARAVGQAGLVDDPRFASPKERSLHDAVLLAALEPWFADKTSAE 685
           G ++ IA   D  +  L   +G+A L + P F     R+    +L AA+  W + +   +
Sbjct: 243 GAYVVIAGNSDPIYKRLMTTIGRADLAEAPEFVHNDGRAAKSGLLDAAITHWTSSRPIEQ 302

Query: 686 AFALLDAAGVPCEIPAAKSWVREALWQDWAVTSNRVIENFDSMYG-HVRQFGSFIHLSDT 744
             + L+AA    E+PA + +    +  D    +  ++ N +   G  V+  G    LS+T
Sbjct: 303 VLSALEAA----EVPAGRIYSVADIVSDPHYQARDMLLNAELPGGVSVKMPGIVPKLSET 358

Query: 745 PGHARKSAPRLGEHTRQILAEIGYAPDAIDALIDSG 780
           PG      P LG+HT  IL  +G     I  L  +G
Sbjct: 359 PGGVNWQGPTLGQHTDDILGSLGLTGADIQRLKTAG 394



 Score = 87.8 bits (216), Expect = 1e-21
 Identities = 100/395 (25%), Positives = 169/395 (42%), Gaps = 51/395 (12%)

Query: 1   MPGPLDHLVVIELSTEMPVAIAGMLLADHGADVLKVEPRGGA------YFAHELTRKSW- 53
           M  PL  + V+E+ T +    A  ++A+ GA+V+K+E  G           HE T   W 
Sbjct: 1   MTAPLSGIKVVEIGTLIAAPFAARMMAEFGAEVIKIEAMGQGDPLRKWRKLHEGTSLWWY 60

Query: 54  --DRSKRSVELNIADADDRAALRGLLGGADIFIHALEEGEARALGLDGESLARDYPELIV 111
              R+K+S+ L++   +    ++ LLG AD+ I  L  G    LGL  + L    P+L +
Sbjct: 61  LQSRNKKSLALDLKSPEGLDLIKQLLGDADVLIENLRPGGLEKLGLGWDVLHALNPKLTL 120

Query: 112 SALTAYGANTPFADRPR----GEGLAAALLGTMIDKSSPFREGPVYLGH--PALHYGQAF 165
             ++ YG   P+ DRP     GE +      T    S P R G V LG    +LH     
Sbjct: 121 VRISGYGQTGPYRDRPGFGAIGEAMGGIRYTTGNPDSPPARVG-VSLGDSLASLH----- 174

Query: 166 LGVIGAL-TAIRARRSSGKGQRVESSLLDAM--LAQSPMNNWWQEDGISYIKAGDSGAVD 222
            GVIGAL + +R +   G GQ V+ SL +++  L +S +  +   D + +++    GA+ 
Sbjct: 175 -GVIGALMSLLRVKTGQGDGQIVDVSLAESVFNLMESLVPEY---DMLGHVRERSGGALP 230

Query: 223 RFGRTRLVTGMFECGDGLFLQIHTGGQGGFKAAMDQLGFGDRVSVVKGAAEMSVPLSDDE 282
                   +  +   DG ++ I       +K  M  +G  D     +           ++
Sbjct: 231 GIA----PSNTYLTADGAYVVIAGNSDPIYKRLMTTIGRADLAEAPE--------FVHND 278

Query: 283 YHIARVEIFDA-----FKARPRAEWIALFQAADVAALPVLEPAEVLLDEQVEFVGQRIAL 337
              A+  + DA       +RP  + ++  +AA+V A  +   A+++ D   +    R  L
Sbjct: 279 GRAAKSGLLDAAITHWTSSRPIEQVLSALEAAEVPAGRIYSVADIVSDPHYQ---ARDML 335

Query: 338 PDAEF-GTIYQAAPAV--RFDRTPCAAPRPAPAIG 369
            +AE  G +    P +  +   TP       P +G
Sbjct: 336 LNAELPGGVSVKMPGIVPKLSETPGGVNWQGPTLG 370