Pairwise Alignments

Query, 560 a.a., Methylsuccinyl-CoA dehydrogenase, predicted by (Erb et al, 2007) from Sphingobium sp. HT1-2

Subject, 375 a.a., short-chain acyl-CoA dehydrogenase from Pseudomonas putida KT2440

 Score =  221 bits (562), Expect = 5e-62
 Identities = 130/378 (34%), Positives = 203/378 (53%), Gaps = 14/378 (3%)

Query: 180 VRDQFFALSNEKVAPFAHEWHLKDELIPLPLVQELGEMGVFGMTIPEEFGGLGMGKTAMC 239
           + D   A + E++ PFA +W  KD   P   + E+ E+G+FGM +PE++GG   G  A  
Sbjct: 10  IADAVRAFAQERLKPFAEQWD-KDHRFPKEAIDEMAELGLFGMLVPEQWGGSDTGYVAYA 68

Query: 240 VVSEELSRGWIGVGSL-ATRSEIAAELFLTGGTAEQKAHWLPQIANAAILPTAVFTEPDT 298
           +  EE++ G     ++ +  + +     L  G  +QK  +L  +A  A+L     TEP  
Sbjct: 69  MALEEIAAGDGACSTIMSVHNSVGCVPILRFGNEQQKEQFLTPLATGAMLGAFALTEPQA 128

Query: 299 GSDLGALRTRATLADGEYRVSGNKTWITHAARADVMTLLVRTDPDTRNYSGLSMLIAPKQ 358
           GSD  +L+TRA L    Y ++G+K +IT    A V+ +   TDP+     G+S  I P  
Sbjct: 129 GSDASSLKTRARLEGDHYVLNGSKQFITSGQNAGVVIVFAVTDPEAGK-RGISAFIVPTD 187

Query: 359 RGTVDTPFPTPGMSGGEIE-VIGYRGMKEYEIGFDDFRVPAANLLGGVEGQGFKQLMATF 417
                    +PG     +E  +G       +I FD+ +VP AN LG  EG+G+K  +A  
Sbjct: 188 ---------SPGYQVARVEDKLGQHASDTCQIVFDNVQVPVANRLGA-EGEGYKIALANL 237

Query: 418 ESARIQTAARAIGVAQAALDIGLSYALDRKQFGRPIFDFPRVANKLAMMAAEIMGARQLT 477
           E  RI  A++A+G+A+AA ++   YA +R+ FG+P+ +   VA +LA MA +I  ARQ+ 
Sbjct: 238 EGGRIGIASQAVGMARAAFEVARDYANERQSFGKPLIEHQAVAFRLADMATKISVARQMV 297

Query: 478 YFAARRKDEDKRCDLEAGMAKLIGARVAWAAADNALQIHGGNGFATEYQVSRLLADARIL 537
             AA  +D  +   +EA MAKL  + +A     +ALQ  GG G+ +++ + R+  D R+ 
Sbjct: 298 LHAAALRDAGRPALVEASMAKLFASEMAEKVCSDALQTLGGYGYLSDFPLERIYRDVRVC 357

Query: 538 NIFEGAGEIQAQVIARRL 555
            I+EG  +IQ  VIAR L
Sbjct: 358 QIYEGTSDIQRMVIARNL 375