Pairwise Alignments

Query, 699 a.a., Peptidoglycan D,D-transpeptidase MrdA (EC 3.4.16.4) from Sphingobium sp. HT1-2

Subject, 631 a.a., transpeptidase (penicillin-binding protein 2) from Pseudomonas putida KT2440

 Score =  299 bits (765), Expect = 3e-85
 Identities = 213/604 (35%), Positives = 311/604 (51%), Gaps = 25/604 (4%)

Query: 21  SRRAMVVGGLQGAIGALLVGRMGWISIAENEKYQLLSESNRVNLTLIPPRRGWIVDRNGR 80
           +RR +    +  ++ A+LVGR+  + + ++++   +SE+NRV++  I P RG I DRNG 
Sbjct: 18  NRRLLACAAMVFSLCAVLVGRLYVLQVLQHDQQTAVSENNRVHVLPIAPERGLIYDRNGV 77

Query: 81  PLANNRTDFRVDLIPQRIV-DAEATVGHLAQLLSLQPDDVDRIKEELDKSAG-FRPVQVA 138
            LA+N+  F + +  +R   D+   +  L Q+L L  DD  +  ++L +    F PV + 
Sbjct: 78  VLADNKPSFDLTMTRERAGGDSAKVLDTLTQVLGLTEDDRKQFDKDLRRGRKPFEPVTLM 137

Query: 139 DKLTYDQFAAVSVRLTDLPGVAPSQGFSRHYPAGATVGHLLGYVGAATAEDYKKRKDPLL 198
             L+ +Q A V+V    LPG+     F R YP      H +GYVG    ++  K  D   
Sbjct: 138 VGLSEEQIALVAVNQFRLPGLEVEPQFIREYPLAGHFAHSVGYVGRINEKE-AKTLDSTE 196

Query: 199 ITPGFKVGKDGLERAYDEHLTGKPGAKRVEVTARGKIVRELTTRPDTPGNPIKLTIDAGL 258
                 +GK G+ER Y+  L G  G + VE  A+G+++R L  +  TPG  I LT+DA L
Sbjct: 197 YRGTQSIGKTGIERFYESQLHGHVGYEEVETNAQGRVMRVLNHKDPTPGQDIVLTLDAHL 256

Query: 259 QEYAGRRLATQSGAVVVIDCHNGDVLACASMPSFDPNSFSDGISHLEWEMLSKDDHVPLR 318
           Q  A + L  + G+VVV+D  NGDVLA  S PSFDPN F  GIS  ++  L      PL 
Sbjct: 257 QIAAEKALGDRRGSVVVLDPANGDVLAMVSNPSFDPNLFVKGISFKQYAALRDSIDRPLF 316

Query: 319 NKVLQGLYPPGSTVKPMVALALLEAGV-SPAETVSCGGAIRVGNTLFHCHKKR-----GH 372
           N+VL+GLY PGSTVKP VA+A L++GV +P   V   G   + N   + HK R     G 
Sbjct: 317 NRVLRGLYAPGSTVKPEVAIAGLDSGVITPGSRVFDPGYYELPN---YDHKYRNWNRSGD 373

Query: 373 GPLNMRGAIAQSCDIYFYQMAQRIGMDRIASMARRVGMGQRFDLPFPSQSYGTVPDPTWK 432
           G ++M  AI +S D YFY +A ++G+DR+       G+GQ+  L    ++ G +P   WK
Sbjct: 374 GWVDMYTAIMRSNDTYFYDLAHKLGIDRLHDYMAEFGLGQKVSLDMFEEASGLMPSAEWK 433

Query: 433 LKKYNQKWQVYDTVNATIGQGYMLINPLQMAVMAARLAT-GRQLMPNFLHGAA------- 484
                Q W   +T+   IGQGYM + PLQ+A   + LA+ G    P+             
Sbjct: 434 RATRRQAWFPGETLILGIGQGYMQVTPLQLAQATSLLASKGVWHRPHLAMTVGGDTPIDP 493

Query: 485 RPEPALVGVPEEHLVTIRDAMSAVVNGGGTGGAARMSIPDVLIAGKTGTAQVRRITMAER 544
            P P +V   +     +   M  V++       A  +     IAGK+GTAQV  I   ER
Sbjct: 494 NPMPDIVLHDKHAWDQVSQGMQMVMHDPRGIARAAAAGAQYRIAGKSGTAQVVAIKQGER 553

Query: 545 AGGVRGNAGLPFKLRDHALFQGFAPFDNPRYAIACIIEHGGHTIRNEDAPMIASDTMSYL 604
                 N  L  + RD+ALF GFAP ++P   +A +IE+G    R    P++     +YL
Sbjct: 554 ---YNRNKTLE-RHRDNALFVGFAPAEHPSVVVAVMIENGEAGGR-VAGPVVREVMDAYL 608

Query: 605 FDPQ 608
            D Q
Sbjct: 609 LDEQ 612