Pairwise Alignments

Query, 699 a.a., Peptidoglycan D,D-transpeptidase MrdA (EC 3.4.16.4) from Sphingobium sp. HT1-2

Subject, 636 a.a., peptidoglycan DD-transpeptidase MrdA from Dickeya dianthicola ME23

 Score =  316 bits (810), Expect = 2e-90
 Identities = 206/599 (34%), Positives = 305/599 (50%), Gaps = 26/599 (4%)

Query: 6   PKRKIVTEATQSFTFSRRAMVVGGLQGAIGALLVGRMGWISIAENEKYQLLSESNRVNLT 65
           P R    EA     F RRA+V       +  +LV  +  + +   + Y+  S  NR+ L 
Sbjct: 7   PFRDYTAEAA---LFVRRALVAFLGILLLSGILVANLYHLQVLRFDDYRTRSNENRIKLV 63

Query: 66  LIPPRRGWIVDRNGRPLANNRTDFRVDLIPQRIVDAEATVGHLAQLLSLQPDDVDRIKEE 125
            I P RG I DRNG PLA NRT ++++LIP+++ + E T+  L  ++ L  +D+D  ++E
Sbjct: 64  PIAPSRGIIYDRNGTPLALNRTIYQLELIPEKVNNLEETLQALKSIIDLTDEDIDNFRKE 123

Query: 126 LDKSAGFRPVQVADKLTYDQFAAVSVRLTDLPGVAPSQGFSRHYPAGATVGHLLGYVGAA 185
             +S  F  + V   L   Q A+ +V     PGV       R+YP GA + H++GYV   
Sbjct: 124 RKRSRRFTSIPVKTGLNEVQVASFAVNQYRFPGVEVKGYQRRYYPYGAALTHVIGYVSKI 183

Query: 186 TAEDYKKRKDPLLITP---GFKVGKDGLERAYDEHLTGKPGAKRVEVTARGKIVRELTTR 242
             +D ++      +        +GK G+ER Y++ L GKPG + VEV  RG+++R+L  +
Sbjct: 184 NDKDLERLDQEGELADYAATHDIGKLGIERYYEDVLHGKPGYEEVEVNNRGRVIRQLHEQ 243

Query: 243 PDTPGNPIKLTIDAGLQEYAGRRLATQSGAVVVIDCHNGDVLACASMPSFDPNSFSDGIS 302
           P   G  I LT+D  LQ Y  + LA    AVVV D  +  +LA  S PS+DPN F DGIS
Sbjct: 244 PPQAGKDITLTLDLNLQLYIEKLLAGSRAAVVVTDPKDASILAMVSTPSYDPNLFVDGIS 303

Query: 303 HLEWEMLSKDDHVPLRNKVLQGLYPPGSTVKPMVALALLEAGV-SPAETVSCGG--AIRV 359
              +  L  D + PL N+  QG+YPP STVKP +A++ L AGV +P  ++   G   +  
Sbjct: 304 SKTYHALLNDPNRPLINRATQGVYPPASTVKPYIAVSALSAGVITPYTSLFDPGWWQLPG 363

Query: 360 GNTLFHCHKKRGHGPLNMRGAIAQSCDIYFYQMAQRIGMDRIASMARRVGMGQR--FDLP 417
               F   KK GHG LN+  ++ +S D +FYQ++  +G+DR++    + G G R   DL 
Sbjct: 364 SEKRFRDWKKWGHGRLNLTKSLEESADTFFYQVSYDMGIDRLSEWMSKFGYGHRTGIDLS 423

Query: 418 FPSQSYGTVPDPTWKLKKYNQKWQVYDTVNATIGQGYMLINPLQM-AVMAARLATGRQLM 476
              +S G +P   WK+K+Y + W   DT+   IGQGY    P+QM   +   +  G+   
Sbjct: 424 DKEESPGIMPTREWKMKRYKKPWYQGDTIPVGIGQGYWTATPIQMLKALTTLINDGQVKA 483

Query: 477 PNFLHGAARPEPALVGVPEEH--LVTIRDAMSAVVNGGGTGGAAR--------MSIPDVL 526
           P+ L         +     EH  +  IR     +V  G  G A R         +     
Sbjct: 484 PHLLSSTQENNTQVPYRQSEHQQIGDIRSGYWEIVKDGMYGVANRQNGTAHKFFADSSYK 543

Query: 527 IAGKTGTAQVRRITMAERAGGVRGNAGLPFKLRDHALFQGFAPFDNPRYAIACIIEHGG 585
           IA K+GTAQV  +   E     R    +  +LRDH L   FAP+ NP+ A++ I+E+GG
Sbjct: 544 IAAKSGTAQVFGLKENETYNANR----IAERLRDHKLMVAFAPYSNPKVAMSIILENGG 598