Pairwise Alignments

Query, 860 a.a., DNA topoisomerase I (EC 5.99.1.2) from Sphingobium sp. HT1-2

Subject, 653 a.a., DNA topoisomerase III from Pseudomonas putida KT2440

 Score =  173 bits (438), Expect = 3e-47
 Identities = 167/547 (30%), Positives = 249/547 (45%), Gaps = 70/547 (12%)

Query: 1   MQLVIVESPAKAKTIEKYLGG-----------DFHVLASYGHIRDLPPKDG--------- 40
           M+L + E P++AK I K LG            D  V    GH+ +  P D          
Sbjct: 1   MRLFLCEKPSQAKDIAKVLGANRKGDGCWQGTDICVTWCIGHLLETAPPDSYDERYKRWN 60

Query: 41  ----SVDPDNGFAMSWENYGDKGKQLKAIADEAKKATRLILATDPDREGEAISWHVQEVL 96
                + PD    +       + K +K +  EA++   L++ATD DREGE I+  + E  
Sbjct: 61  LADLPIIPDKWKMLVKPKTASQFKAVKRLLGEARE---LVIATDADREGEMIARELVEHC 117

Query: 97  RAKKALPQTVDRVTFNAITKAAVLDAMAK--PRALDEDLIDAYRARRALDYLVGFTLS-- 152
           R +      V R+  +A+  A++  A+A+  P     +L  +   R   D+L+G  +S  
Sbjct: 118 RYRGP----VQRLWLSALDDASIRKALARLLPGHETFNLYHSALGRSRADWLIGMNMSRL 173

Query: 153 -PVLWRK--LPGAKSAGRVQSVALRLVVEREREIESFVPQEYWSISAEMEQGGQGFTARL 209
             +L R+    G    GRVQ+  LRLVV+R+R I +FVP  +W+I  ++E  GQ F A+ 
Sbjct: 174 FTLLGRQSGYQGVLPVGRVQTPTLRLVVDRDRSIANFVPVPFWAIDVQLEHAGQRFNAQW 233

Query: 210 VRWKGEKIDRLTIGKEGDAMAAKADV-EAGRFTVDKVETKPLTRNPPPPFTTSTLQQEAA 268
              +    D+    K+  A  A AD+  AG     KV T+ +    P PF   TLQ+  +
Sbjct: 234 RAPEDACDDQGRCLKQSLAQQAAADIGHAGTARAVKVATERVREAAPLPFDLGTLQELCS 293

Query: 269 RKLGFSASHTMRIAQQLYE-DGAITYMRTDGVQMDGS--AISAARKAIAERYDGGYLPEK 325
           +K G  A  T+ IAQ LYE    ITY R+D   +  S  A + A  A  +R D    P +
Sbjct: 294 KKFGLGAQETLDIAQALYETHKLITYPRSDCGYLPQSQHAEAPAILAALQRADASLAPLQ 353

Query: 326 P---RQYQTKAKNAQE--AHEAIRPTEFHRDKVG-GGDHARLYDLIFKRALASQMASARL 379
           P    Q +++A N  +  AH  I PT    D       H  +Y LI  R LA  + +   
Sbjct: 354 PYLEPQRRSRAWNDAKVSAHHGIIPTAAASDPSRLPAKHKAVYTLIRARYLAQFLPNHEY 413

Query: 380 ERTTIDMVDGSGSHTLRATGQVVIFPGFLALYEEGRDDA---EDDDSKLLPRLSEGDAPA 436
           +RT  D  D +G H LRA G+ ++ PG+     E    A   E   +++LP L EG    
Sbjct: 414 DRTQADF-DCAG-HALRAVGKQIVEPGWRRALPEALTPAKGREAPPAQVLPALREGQDCN 471

Query: 437 KKKVSAEQHFTQPPPRYSEASLVKKL-----------------EELGIGRPSTYASTLQV 479
              +  +  +TQPP  ++E  L+K +                 E  GIG  +T AS +Q 
Sbjct: 472 VHGLQLKDLWTQPPKPFTEGDLIKAMKNVAKLVDDPRLKQKLKETTGIGTEATRASIIQG 531

Query: 480 LKDRDYV 486
           L DR Y+
Sbjct: 532 LLDRGYL 538