Pairwise Alignments

Query, 860 a.a., DNA topoisomerase I (EC 5.99.1.2) from Sphingobium sp. HT1-2

Subject, 674 a.a., DNA topoisomerase III from Dickeya dianthicola ME23

 Score =  151 bits (382), Expect = 1e-40
 Identities = 162/600 (27%), Positives = 255/600 (42%), Gaps = 71/600 (11%)

Query: 57  DKGKQLKAIADEAKKATRLILATDPDREGEAISWHVQEVLRAKKALPQTVDRVTFNAITK 116
           D   Q   I    K++  +++ATD DREGE I+  + E  R        V R+  +A+ +
Sbjct: 79  DTADQFAVITRLLKQSDEVVIATDADREGEVIARELLEYCRFNGV----VSRLWLSALDE 134

Query: 117 AAVLDAMA--KPRALDEDLIDAYRARRALDYLVGFTLSPVLWRKL-----PGAKSAGRVQ 169
           A+V  A+A  +P    E+L  A   R   D+L+G  +S +   K       G  S GRVQ
Sbjct: 135 ASVRKALANIRPGNETENLYYAGLGRGRADWLIGMNISRLYTLKARELGYDGVLSVGRVQ 194

Query: 170 SVALRLVVEREREIESFVPQEYWSISAEMEQGGQGFTARLVRWKG-EKIDRLTIGKEGDA 228
           + AL LVV R+R I SFVP+ Y+ ++ ++E GG  F A  V        +R  + +    
Sbjct: 195 TPALALVVNRDRLIASFVPKPYFQVNVKLESGGVVFPAEWVAAAAYTDGERRCVNQAVAE 254

Query: 229 MAAKADVEAGRFTVDKVETKPLTRNPPPPFTTSTLQQEAARKLGFSASHTMRIAQQLYE- 287
              K  +  G+  +  VE K      P  F+   LQQ  A + G+S    +  AQ LYE 
Sbjct: 255 QVRKLCLTVGKAVILDVEKKREKIPAPLAFSLGVLQQVCAERFGYSPQQVLDTAQALYET 314

Query: 288 DGAITYMRTDGVQMDGSAISAARKAIA--ERYDGGYLP---EKPRQYQTKAKNAQE--AH 340
             A TY RTD   +  S +S     ++  ++ D    P        ++++  + ++  AH
Sbjct: 315 HKATTYPRTDCGYLPESMLSEVPHVLSALQQSDPSLAPVIASIDPSFRSRIWDDKKITAH 374

Query: 341 EAIRPTEFHRDKVGGGDHA--RLYDLIFKRALASQMASARLERTTIDMVDGSGSHTLRAT 398
            AI PT  H+  + G + A   +Y LI    LA  M    ++ T        G    R +
Sbjct: 375 HAIIPTP-HKCNLAGMNEAERNVYTLIRTHYLAQFMPLLEMDVTRASF--NIGGQLFRTS 431

Query: 399 GQVVIFPGFLALYEEGR---DDAEDDDSKL--LPRLSEGDAPAKKKVSAEQHFTQPPPRY 453
           G+V + PG+  L+ +      D  DD++    LP L++      +    +   T+PP  Y
Sbjct: 432 GRVTVVPGWKTLFGQAAASDSDERDDEAAAVSLPPLTKDAVCGIRGAELKALKTKPPQPY 491

Query: 454 SEASLVKKL-----------------EELGIGRPSTYASTLQVLKDRDYVRVEKNRFFAE 496
           S  +L+  +                 +  G+G  +T A  L VL  R ++  + N   A 
Sbjct: 492 SFKTLIAAMMNAAGLVDDPALKKVLRDNAGLGTEATRAGILDVLMKRGFLIKKGNHLHAS 551

Query: 497 ESGRLVTAFLERFFERYVSYDFTAGLEDELDEISGGRAQWQEVLEAFWKDFKPKTAEIME 556
           ++       ++           TA  E  LD+I+ G+      L++F         +++E
Sbjct: 552 DT---ACDLVDALPAALTQVGMTALWEQALDDIAAGKM----TLDSFVDRQLRWVNQLVE 604

Query: 557 Q-KPSDITAELDKFLEPMLFPPKADGSNPRACPLCADGQLSLRGGRFGAFIACSNYPECK 615
           Q K    T  + +        PK        CPLC  G+  LR G  G F  C NYP CK
Sbjct: 605 QGKQQAFTIRVPE-------RPK--------CPLCG-GRTRLRKGPNGTFYGCENYPTCK 648