Pairwise Alignments

Query, 160 a.a., RNA-binding protein Hfq / RNA-binding protein Hfq from Sphingobium sp. HT1-2

Subject, 86 a.a., RNA-binding protein Hfq from Pseudomonas putida KT2440

 Score = 79.7 bits (195), Expect = 1e-20
 Identities = 42/82 (51%), Positives = 59/82 (71%), Gaps = 1/82 (1%)

Query: 4  KVNNLQDIFLNSLRKSKTPVTMFLVKGVKLQGIITWFDNFSVLLRRDGQSQLVYKHAIST 63
          K ++LQD +LN+LRK K PV+++LV G+KLQG I  FD F VLL ++  SQ+VYKHAIST
Sbjct: 3  KGHSLQDPYLNTLRKEKVPVSIYLVNGIKLQGSIESFDQFVVLL-KNTVSQMVYKHAIST 61

Query: 64 VMPAQTMDLTDLRKASDGNGKP 85
          V+PA+ + L     +  G+ +P
Sbjct: 62 VVPARPVRLPSPTDSEHGDSEP 83



 Score = 63.5 bits (153), Expect = 8e-16
 Identities = 33/76 (43%), Positives = 50/76 (65%), Gaps = 1/76 (1%)

Query: 84  KPRLLQEIFLSAVRKSGSPVTMFLVNGVMLQGEIAAFDLFCMLLERDGMVQLVYKHAIST 143
           K   LQ+ +L+ +RK   PV+++LVNG+ LQG I +FD F +LL ++ + Q+VYKHAIST
Sbjct: 3   KGHSLQDPYLNTLRKEKVPVSIYLVNGIKLQGSIESFDQFVVLL-KNTVSQMVYKHAIST 61

Query: 144 VQPLHSLDLSGENEQD 159
           V P   + L    + +
Sbjct: 62  VVPARPVRLPSPTDSE 77