Pairwise Alignments

Query, 360 a.a., Rossmann fold nucleotide-binding protein Smf possibly involved in DNA uptake from Sphingobium sp. HT1-2

Subject, 365 a.a., putative Rossmann fold nucleotide-binding protein from Pseudomonas putida KT2440

 Score =  205 bits (522), Expect = 1e-57
 Identities = 142/358 (39%), Positives = 190/358 (53%), Gaps = 28/358 (7%)

Query: 9   RLRLIRSPRIGPVSYRQLLARFGSAAEALRA---------IPMLAARGGGEARVADGAAI 59
           RLRL R P  G   +R LL  FGSA+ AL A         IP         A V DGA  
Sbjct: 17  RLRLHRLPDAGLRRFRTLLEAFGSASSALSAPASAWRALGIPQATIDARRSAEVRDGALA 76

Query: 60  EREIAATRAIGARYLLMGDADYPALLAEMEGAPPALIVRGDAAIAARPCIAMVGARNASA 119
              +A     G   L+     YPALLAE++ APP L V G+ A+  RP +A+VG+R A+ 
Sbjct: 77  A--MAWLERPGQHLLMWDGPGYPALLAEIDDAPPLLFVAGEPALLDRPQLAIVGSRRATP 134

Query: 120 AACRFARILAQQLGDRGAVVVSGLARGIDTEAHRGSIDSG--TIGVIASGIDIGFPPENA 177
            A   AR  ++ L   G  + SGLA G+D  AHR ++ +G  TI V+ +G+   +P  + 
Sbjct: 135 PALDTARAFSRYLAQAGFTITSGLAVGVDGAAHRAALQAGGGTIAVLGTGLQKLYPQRHR 194

Query: 178 ALQEDVAQRG-LLVTEHPPGTQPLARHFPARNRIIAGLALGTVVVEAAPKSGSLITARLA 236
            L + +   G  LV+E+P    PL  +FP RNRII+GL+LG +VVEA+  SGSLITARLA
Sbjct: 195 DLAQAMIDNGSALVSEYPLDAGPLPGNFPRRNRIISGLSLGVLVVEASLASGSLITARLA 254

Query: 237 TEAGREVMAVPGSPLDPRAQGCNLLIREGATLVQNADDILEAVGGLDPRMVRQGSFDFIG 296
            E GREV A+PGS   P A+GC+ LIR+GA LV+  + ILE++ G               
Sbjct: 255 AEQGREVYAIPGSIHHPGAKGCHQLIRDGALLVETVEQILESLQG--------------W 300

Query: 297 QPVSSDVADADRAAVIALLGPVAVAVDEIIRLSGLSPAIVQTVLLELELAGGLERQAG 354
           Q +   V D     ++ALL       + +   S    A V   L ELEL G +  +AG
Sbjct: 301 QNLPPAVVDKFDHPLLALLHAAPQTSESLAHCSEQPLADVLAQLTELELEGRVSNEAG 358