Pairwise Alignments

Query, 532 a.a., ATP-dependent DNA ligase (EC 6.5.1.1) LigC from Sphingobium sp. HT1-2

Subject, 837 a.a., ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD from Sphingobium sp. HT1-2

 Score = 72.0 bits (175), Expect = 8e-17
 Identities = 94/335 (28%), Positives = 139/335 (41%), Gaps = 54/335 (16%)

Query: 212 PLEADSVDLADYAAEW----KWDGIRIQIVGTGRETRLYSRAGDDITGSFPEIAQAFTG- 266
           P  A  VD      EW    K+DG R  +  +G   ++Y+R+G D T  F  +A A    
Sbjct: 240 PQLATLVDNVPVGNEWMHEIKYDGYRALVAVSGEAIKIYTRSGLDWTDKFSPLAGAIKAL 299

Query: 267 ---HAVLDGELLVKGEFQGAKEHGGAAASFNALQQRLGRKAVSAKMMADYPAFVRLYDLL 323
               A++DGE++                SF+ALQ  L R   + +  AD P     +DLL
Sbjct: 300 DLPPALIDGEIIA--------FDADGNPSFSALQAVLKRGHGAER--ADTPFHFFAFDLL 349

Query: 324 IEGDDDLRALPWTQRRARLEAYMAQLSPDRFDLSAVIDAPDFAALADIRAGARDAAIEGV 383
                DL++LP  +R+ RLEA +A           +I + +    +  +AG      EG+
Sbjct: 350 SLDGMDLKSLPAIERKERLEALLADAEQPIHVADHLIGSGEKLYRSLCQAGQ-----EGI 404

Query: 384 MLKRRDSPYVAGRKAALWYKWKRDPLTADCVMMYAQRGHGKRSSFYSDYTFGCWTEDGEL 443
           + KR D+PY +GR  A W K K      + V++   R   K  +F S    G   E  EL
Sbjct: 405 IAKRVDAPYRSGRTRA-WVKVK-CTRRQEFVIVGWTRSKAKGRAF-SSLLLG-QHEGSEL 460

Query: 444 LPVGKAYSGFTDEELKWLDRFVRGNTVNRFGP-----------------VREVEKTLVLE 486
           +  GK  +GF        D     +     GP                 V+ VE  LV E
Sbjct: 461 VYKGKVGTGF--------DAATMTDLAEAMGPISTGTPQVIISAREARDVQWVEPRLVAE 512

Query: 487 VAFDSI--HDSKRHKSGLAMRFPRIARIRRDKPAA 519
           V+F         RH S L +R  ++A+  + + AA
Sbjct: 513 VSFAEFTGEGRVRHGSFLGLRSDKLAKTVKPEKAA 547