Pairwise Alignments

Query, 530 a.a., ABC transporter substrate-binding protein from Ralstonia solanacearum UW163

Subject, 512 a.a., predicted peptide transporter subunit: periplasmic-binding component of ABC superfamily (NCBI) from Escherichia coli BW25113

 Score =  192 bits (487), Expect = 3e-53
 Identities = 160/531 (30%), Positives = 258/531 (48%), Gaps = 45/531 (8%)

Query: 11  SAVVALSVAMALAPAAVHAQPPSTLVIGLSGDITSLDPHFHNVTPNANVAEHLFETLIAK 70
           S +VAL +A AL  +   A     +V+ +  + T+LDP+  N T +  VA+  ++ L   
Sbjct: 8   SGLVALGIATALMASCAFAA--KDVVVAVGSNFTTLDPYDANDTLSQAVAKSFYQGLFGL 65

Query: 71  DDKMRLKPGLATSWRAVSDTV-WELKLRPGVQFHDGSEFTSADVVYSLARPATIKNSPSP 129
           D +M+LK  LA S+    D + + +KLR G++F DG++F +A V  +L R +   N    
Sbjct: 66  DKEMKLKNVLAESYTVSDDGITYTVKLREGIKFQDGTDFNAAAVKANLDRASDPANHLKR 125

Query: 130 YTIYTRGFKEVTAVDRLTVRITTNGPYPLVPNDLS--TLYIVSKKAAEKAGPDDFNNGRA 187
           Y +Y +   +  A+D  TV+IT   P+    N L+     ++S  A EK G +    G  
Sbjct: 126 YNLY-KNIAKTEAIDPTTVKITLKQPFSAFINILAHPATAMISPAALEKYGKE---IGFY 181

Query: 188 LIGTGPYKFVSFTKGDRLELARNDAYWGK-KPQWDHVTLRILTADASRVAALLAGDVQVI 246
            +GTGPY+  ++ + D +++ +   YW    P+ D +T R +  + +R A L  G+ Q  
Sbjct: 182 PVGTGPYELDTWNQTDFVKVKKFAGYWQPGLPKLDSITWRPVADNNTRAAMLQTGEAQFA 241

Query: 247 EGVPPPDVRKLAANPAVSVFKMPAFRLMYLHMDSARDASPFVTDKAGRPLAKNPLRDVRV 306
             +P      L  N  + +   P+    Y+ M+        VT K        P  + +V
Sbjct: 242 FPIPYEQATLLEKNKNIELMASPSIMQRYISMN--------VTQK--------PFDNPKV 285

Query: 307 RQAISLAISRQAIVDRVMEGAAEPTGQLVNSTLFGHVPDLKAPVTDVAAAKKLLAQAGYP 366
           R+A++ AI+R A+V     G A P   +V  ++  +    K    D   A++LL +AGYP
Sbjct: 286 REALNYAINRPALVKVAFAGYATPATGVVPPSI-AYAQSYKPWPYDPVKARELLKEAGYP 344

Query: 367 DGFGITLHATNNRYVNDNRVAQAIASMLARVGIAAKVEAMPSATFFTRANKLE------- 419
           +GF  TL +++N +    +V Q     LA+VGI A+V AM +     RA ++E       
Sbjct: 345 NGFSTTLWSSHN-HSTAQKVLQFTQQQLAQVGIKAQVTAMDAG---QRAAEVEGKGQKES 400

Query: 420 -FSFLLAGWGADTGEASSSLKALLATYDPARGWGAS--NRGRYSNAALDAKLAEALQTLD 476
                  GW A TGEA  +L  L A    ++ W  +  N   YSN  +D  LA+AL+T D
Sbjct: 401 GVRMFYTGWSASTGEADWALSPLFA----SQNWPPTLFNTAFYSNKQVDDFLAQALKTND 456

Query: 477 DARREKLLQEATEIGMREAGVIPLYFNINVWAARKDYTVVPHLDDRTHAFE 527
            A + +L + A +I  +E+  IPL     V A  K+ T    + D   +FE
Sbjct: 457 PAEKTRLYKAAQDIIWQESPWIPLVVEKLVSAHSKNLTGFWIMPDTGFSFE 507