Pairwise Alignments

Query, 895 a.a., PAS domain S-box protein from Ralstonia solanacearum PSI07

Subject, 1105 a.a., predicted diguanylate cyclase, GGDEF domain signalling protein (NCBI) from Escherichia coli BW25113

 Score =  134 bits (337), Expect = 3e-35
 Identities = 153/586 (26%), Positives = 237/586 (40%), Gaps = 44/586 (7%)

Query: 339 VSTAFRKLMDEVTRQRAELEAVNDASPLGLFRCDAAGHMVYANQACRRLLGLTLEEAMTG 398
           V  AFR     ++          + S +G+      G  +  N+A  + LG + EE    
Sbjct: 286 VMYAFRAERKHISESETHFRNAMEYSAIGMALVGTEGQWLQTNKALCQFLGYSQEELRGL 345

Query: 399 TWLARLHPQDREAVTAGWADAVTRGVG-HCAELRVIVPGRDERLLVVNTAPVR-VEGQVV 456
           T+     P+D           ++  +  +  E R      D    ++  + VR  +G  +
Sbjct: 346 TFQQLTWPEDLNKDLQQVEKLISGEINTYSMEKRYYNRNGDVVWALLAVSLVRHTDGTPL 405

Query: 457 GHVGAMEDITVRARAEQASRVLTQ--ILDSTTDFVAQTDVQGRVTYINPAGRRFAGVALD 514
             +  +EDI    R EQ ++ L +   L +    +   + + +    +   R F    + 
Sbjct: 406 YFIAQIEDINELKRTEQVNQQLMERITLANEAGGIGIWEWELKPNIFSWDKRMFELYEIP 465

Query: 515 ADVRDRRA---ETFYPDDTMQWLREVAVPTAARDGVWIG-ETTVFDAQRRAVPINHMVIV 570
             ++       E   P+D     + +     +R    +    TV D  R    + + V+ 
Sbjct: 466 PHIKPNWQVWYECVLPEDRQHAEKVIRDSLQSRSPFKLEFRITVKDGIRHIRALANRVL- 524

Query: 571 HRDPMGRVEYFSSIMRDITQDKAAKEALQRSRETLQTVTDAMPALVAFVDADERFRFLNA 630
             +  G VE    I  D+T+ K   EAL + +E L    D++   V  +D   +  F+N 
Sbjct: 525 --NKEGEVERLLGINMDMTEVKQLNEALFQEKERLHITLDSIGEAVVCIDMAMKITFMNP 582

Query: 631 AYEKVFDRPTAAMLGLTVHEVLGEEAYAAMR------GPLQR----------ALAGETVV 674
             EK        M G T  E LG      +       GPL            A+  + V+
Sbjct: 583 VAEK--------MSGWTQEEALGVPLLTVLHITFGDNGPLMENIYSADTSRSAIEQDVVL 634

Query: 675 FEREAPDRDPYRCDEITYIPQFDARGRVAGVHAVMLDITERKKQELHLRALSTTDHLTGL 734
             R     D +    IT +   D  G   G   V+ D+TE +K    L   ++ D LT L
Sbjct: 635 HCRSGGSYDVHY--SITPLSTLD--GSNIGSVLVIQDVTESRKMLRQLSYSASHDALTHL 690

Query: 735 LNRAGFEARLSAALAQARGDGTVGALLLLDLDGFKVVNDTHGHAVGDALLRRFAQRLART 794
            NRA FE +L   L          AL+ +DLD FK VND+ GHA GDALLR  A  +   
Sbjct: 691 ANRASFEKQLRILLQTVNSTHQRHALVFIDLDRFKAVNDSAGHAAGDALLRELASLMLSM 750

Query: 795 VRPCDGVARFGGDEFAVIL--AQPDDARAVARHILAAC-DRPFRLGEAVVRVGASIGIAG 851
           +R  D +AR GGDEF ++L     + AR +A  I++A  D  F     V RVGAS GI  
Sbjct: 751 LRSSDVLARLGGDEFGLLLPDCNVESARFIATRIISAVNDYHFIWEGRVHRVGASAGITL 810

Query: 852 FDAGTLAQSAVFEAADEALYEAKSRGKGLFVAFD--ELSAGSSRTA 895
            D      + V   AD A Y +K+ G+G    ++  + +A S R A
Sbjct: 811 IDDNNHQAAEVMSQADIACYASKNGGRGRVTVYEPQQAAAHSERAA 856