Pairwise Alignments

Query, 304 a.a., putative D-alanine--D-alanine ligase from Pseudomonas putida KT2440

Subject, 323 a.a., D-alanine--D-alanine ligase (EC 6.3.2.4) from Variovorax sp. SCN45

 Score =  153 bits (386), Expect = 6e-42
 Identities = 99/298 (33%), Positives = 157/298 (52%), Gaps = 14/298 (4%)

Query: 5   IAIITGGNSSEREVSLQTSEAVSQSLKTLQISHEILTISDYRELLSLDLAKFTRVFLALH 64
           +A++ GG+S+ERE+SL +   V ++L++  +       S  REL  L    F R F+ALH
Sbjct: 12  VAVLFGGSSAEREISLMSGTGVLEALRSRGVDAHAFDPSQ-RELADLKREGFARCFVALH 70

Query: 65  GGFGENGMAQAYLEGLGIPYNGPSPQASAICMDKLLTKHIARGLGINVANYL---YSKNG 121
           G  GE+G  Q  LE LGIPY G    AS++ MDK++TK I +  G+    Y+   + +  
Sbjct: 71  GRHGEDGTVQGALELLGIPYTGSGVMASSVAMDKVMTKRIWQADGLPTPKYVRLAFDQQS 130

Query: 122 DDVCFEEISERLGTPCIVKPNREGCSFGVSLVRDLKADLQPAINAAAKFHTGILIEEFIS 181
            +     + + LG P IVKP REG S GV+ V    + +Q AI  +AK+   +L EEFI 
Sbjct: 131 REQIM-AVPDVLGLPLIVKPPREGSSIGVTKVEGY-SQMQDAITLSAKYDADVLCEEFIE 188

Query: 182 GPELSVCY----LNKSTLPIYTVEFESDFFSYDAKFIS--TKTNATLTILDRSTHQLVTN 235
           G E++       L+   LP+  +      + Y  K+ +   K      + D   H++   
Sbjct: 189 GEEVTCAVLGHGLDARALPVVRIAAPEGAYDYQNKYFTDDVKYQCPSGLPDAEEHEIQRI 248

Query: 236 YCSAIAEALELDYFRADFIVH--NTEPYLIELNTLPGLTSHSLFPKACQQHGIEFDKL 291
             +A        + RAD ++   + +P+L+E+NT PG+TSHSL P + +  GI +++L
Sbjct: 249 ALAAYRTLGCRGWGRADVMIRASDRKPFLLEMNTSPGMTSHSLVPMSARAAGIAYEEL 306