Pairwise Alignments

Query, 233 a.a., ABC transporter related from Pseudomonas putida KT2440

Subject, 542 a.a., Ribose ABC transporter, ATP-binding protein RbsA (TC 3.A.1.2.1) from Variovorax sp. SCN45

 Score = 67.4 bits (163), Expect = 5e-16
 Identities = 53/217 (24%), Positives = 105/217 (48%), Gaps = 15/217 (6%)

Query: 3   ILTINNLHFGYSGNPLLNDIELTIKAGELVGILGNNGAGKTTLFDLICKIKKPAKGAI-- 60
           +L+++ +   Y+  P+L+D+ L + AGE++ + G NGAGK+TL  ++C + +P +G +  
Sbjct: 9   VLSLSTMGKDYAA-PVLDDVSLVLNAGEVLALTGENGAGKSTLSKIVCGLVQPTRGQMLL 67

Query: 61  -----SNLSRRQAYLTQILTPPPLLRMNEAGKLITSLTPNASPDHTEILSKLAKWSPSLS 115
                +  SRR A    +      L +     +  +L  +  P  T  + +  K +   +
Sbjct: 68  DGQPFAPGSRRDAERLGVRMVMQELGLVTTLSVAENLLLDRLPSKTGWIRR-GKLNELAA 126

Query: 116 RRYAEIAKKK------AANCSYGEIRSYFTLTLLLLNSDLIILDEPTAGVDPEFRHYIWL 169
           R+ A+I  +        A    G+ +       L  ++ +++LDEPTA + P    +++ 
Sbjct: 127 RQLAKIGMQNIDPATPVARLGIGQQQMVEIARNLQDDTRVLVLDEPTAMLTPRETSHLFE 186

Query: 170 GIKSACAEGASVLIASHYTEEITKNCQRFYMLANKRL 206
            I+   A G +++  SH  EE+ +   R  +L + RL
Sbjct: 187 QIELLKARGVAIVYVSHRLEELQRIADRVAVLRDGRL 223



 Score = 47.4 bits (111), Expect = 6e-10
 Identities = 51/225 (22%), Positives = 96/225 (42%), Gaps = 24/225 (10%)

Query: 18  LLNDIELTIKAGELVGILGNNGAGKTTLFDLICKIKKPAKGAIS---NLSRRQAYLTQIL 74
           ++ D+++ ++AGE++G+ G  G+G+T L  L+    +  +G I+   N    Q       
Sbjct: 272 VVRDVDIDLRAGEVMGLAGLVGSGRTELVRLLFGADRADRGEITLYENDQPVQQARKGWR 331

Query: 75  TPPPLLRMN---------EAGKLIT-SLTPNASPDHTEILSK-----------LAKWSPS 113
           +P   +R             G L+T S+  NA+      +S+           +A+    
Sbjct: 332 SPMQAIRAGIGLVTEDRKSQGLLLTQSIRVNATLSDLGAISRAGWLQRAKERGIAQKLVE 391

Query: 114 LSRRYAEIAKKKAANCSYGEIRSYFTLTLLLLNSDLIILDEPTAGVDPEFRHYIWLGIKS 173
           L R  +   ++  A  S G  +       L     +++LDEPT GVD   R  ++  +  
Sbjct: 392 LLRIRSRSIEQPVATLSGGNQQKVVFARWLHRECKVLLLDEPTRGVDVGARADLYAELDR 451

Query: 174 ACAEGASVLIASHYTEEITKNCQRFYMLANKRLEAFDSGGQFMER 218
               G ++L+ S    E+   C R  +++  RL A    G++ E+
Sbjct: 452 MTDAGKALLMVSSDLRELMAMCDRIGVMSAGRLVAVFERGEWTEQ 496