Pairwise Alignments

Query, 233 a.a., ABC transporter related from Pseudomonas putida KT2440

Subject, 929 a.a., Ribosome-associated ATPase RbbA from Sphingobium sp. HT1-2

 Score = 72.0 bits (175), Expect = 4e-17
 Identities = 59/205 (28%), Positives = 94/205 (45%), Gaps = 20/205 (9%)

Query: 2   DILTINNLHFGYSGNPLLNDIELTIKAGELVGILGNNGAGKTTLFDLICKIKKPAKGAIS 61
           + + I +L   Y G   LN++ L++  G+   ++G +G GK+TL  LI  +KK   G +S
Sbjct: 11  EAIRIESLSHRYGGIIALNEVSLSLPKGKTTALVGPDGVGKSTLLGLISGVKKLQTGRLS 70

Query: 62  NLS-------RRQAYLTQILTPPPLLRMNEAGKLITSLTPNASPDHTEILSKLAKWSPSL 114
            L        +R+ +L+++   P  L  N    L  +L+   + D    L  L+      
Sbjct: 71  VLGFDLTERRKREEFLSRVAYMPQGLGRN----LYPTLSVRENIDFFGRLFGLSAVEREA 126

Query: 115 SRR-------YAEIAKKKAANCSYGEIRSYFTLTLLLLNSDLIILDEPTAGVDPEFRHYI 167
             R        A    + A   S G  +       L+ + DL+ILDEPT GVDP  R   
Sbjct: 127 HMRRLLDATGLAPFPDRPAGKLSGGMKQKLGLCCSLVHDPDLLILDEPTTGVDPLSRRQF 186

Query: 168 WLGIKSACAE--GASVLIASHYTEE 190
           W  + + CAE    +VL+++ Y EE
Sbjct: 187 WELVDAMCAERPDMTVLVSTAYMEE 211



 Score = 62.8 bits (151), Expect = 2e-14
 Identities = 55/224 (24%), Positives = 97/224 (43%), Gaps = 20/224 (8%)

Query: 19  LNDIELTIKAGELVGILGNNGAGKTTLFDLICKIKKPAKGAISNLSR-----------RQ 67
           ++ +   I  GE+ G LG+NG GKTT   ++  +     G  S   R           R 
Sbjct: 292 VDHVSFRIGRGEIFGFLGSNGCGKTTTMKMLTGLLDATDGTASLFGRPIAPGDMETRMRV 351

Query: 68  AYLTQILTPPPLLRMNEAGKLITSLTPNASPDHTEILSKLAKWSPSLSRRYAEIAKKKAA 127
            Y++Q  +    L + +   L   L         E++S       +L++   E       
Sbjct: 352 GYMSQAFSLYEELSVRQNLVLHARLYRVPRQQAGELVSA------ALAQFELEAHADAVP 405

Query: 128 NCSYGEIRSYFTLTLLLLNS-DLIILDEPTAGVDPEFRHYIWLG-IKSACAEGASVLIAS 185
                 IR    L    L+  +++ILDEPT+GVDP  R   W   I+ +  EG ++ +++
Sbjct: 406 AALPLGIRQRLQLAAACLHRPEILILDEPTSGVDPAARDMFWRHLIRLSRDEGVTIFVST 465

Query: 186 HYTEEITKNCQRFYMLANKRLEAFDSGGQFMERHHAKSLDEAFI 229
           H+  E  + C R  ++   R+    +  +  +R+ A+ L++AFI
Sbjct: 466 HFMNE-AERCDRISLMHRGRVLTVGAPTELTQRYDAQRLEDAFI 508