Pairwise Alignments

Query, 511 a.a., transposase from Pseudomonas putida KT2440

Subject, 537 a.a., IS66-like element IS682 family transposase from Escherichia coli ECRC100

 Score =  314 bits (804), Expect = 6e-90
 Identities = 189/530 (35%), Positives = 283/530 (53%), Gaps = 43/530 (8%)

Query: 7   LDQMTPEQLRALAA--QALQLQSQVEAMSR--------KIQNDEILIEQFKFEIALLKRH 56
           L+++  EQ  AL    Q L L  + EA  R        KI+ +E  IE  + +I  L+R 
Sbjct: 12  LERLLSEQAEALRQKDQQLSLVEETEAFLRSALARAEEKIEEEEREIEHLRAQIEKLRRM 71

Query: 57  KFAKRSEQISPAQGSLLDDLLDTDLEAIEAELKQLLPASSQ-----------AEPRQSPK 105
            F  RSE+            L  ++E  EA+LKQ    S +            + RQS  
Sbjct: 72  LFGTRSEK------------LQREVEQAEAQLKQREQESDRYSGREDDPQVPRQLRQSRH 119

Query: 106 RAPLPPQFPRAVIRHEPENTQCA-CGCQLQRIGEDVSEKLDYTPGVFTVEQHVRGKWACR 164
           R PLP   PR + R EPE + C  CG +L  +GE  +E+L+       V + VR K AC 
Sbjct: 120 RRPLPAHLPREIHRLEPEESCCPECGSELDYLGEVSAEQLELVSSALKVIRTVRVKKACT 179

Query: 165 QCETLIQAPVPAQVIDKGIPTAGLLAHVMVAKFADHLPLYRQEKILGRAGLAIARSTLAQ 224
           +C+ +++AP P++ I++GI  +GLLA V+  K+ +HLPLYRQ +I  R G+ ++R+ L+ 
Sbjct: 180 KCDCIVEAPAPSRPIERGIAGSGLLARVLTGKYCEHLPLYRQSEIFARQGIELSRALLSN 239

Query: 225 WVGQTGVRLQPLVDALREAVLKQGVIHADETPVQMLAPGEKKTHRAYVWAYSTTPFSALN 284
           WV      +  L D L   V+    +H D+TPV++LAPG KK     +W Y     +A +
Sbjct: 240 WVDACCQLMTLLNDTLYRYVMNTRKVHTDDTPVKVLAPGRKKAKTGRIWTYVRDDRNAGS 299

Query: 285 ----AVVYDFSPSRAGEHARNFLGDWSGKLVCDDFAGYKAGFEQ-----GITEIGCMAHA 335
               AV + +SP R G+H    L  + G L  D F+GY   F        +TE+ C AHA
Sbjct: 300 SEPPAVWFAYSPDRQGKHPVQHLRPFRGILQADAFSGYDRLFSAEREGGALTEVACWAHA 359

Query: 336 RRKFFDLHVANKSQLAEQALHSISGLYEVERQAREMSDEDRWRIRQELAVPISKTLHEWM 395
           RRK  D+++++KS  AE+AL  IS LY +E + R + + +R  +RQ+ +  +  +LHEWM
Sbjct: 360 RRKIHDVYISSKSATAEEALKRISELYAIEDEIRGLPESERLAVRQQRSKVLLTSLHEWM 419

Query: 396 LAQRDLVPNGSATAKALDYSLKRWVALTRYLDDGSVPIDNNQVENQIRPWALGRSNWLFA 455
           + +   +   S   +A  Y L +W AL  Y DDG    DNN  E  +R   LG+ N++F 
Sbjct: 420 VEKNGTLSKKSRLGEACSYVLNQWDALCYYSDDGLAEADNNAAERALRAVCLGKKNFMFF 479

Query: 456 GSLRSGKRAAAIMSLIQSARMNGHDPYAYLKDVLTRLPTQRASEIGQLLP 505
           GS   G+R A +  LI + R+NG DP AYL+ +L+ LP   ++ + +LLP
Sbjct: 480 GSDHGGERGALLYGLIGTCRLNGIDPEAYLRHILSVLPEWPSNRVDELLP 529