Pairwise Alignments

Query, 728 a.a., DNA-dependent ATPase I and helicase II, nucleotide Excision Repair Complex from Pseudomonas putida KT2440

Subject, 660 a.a., UvrD-helicase domain-containing protein from Rhodanobacter sp000427505 FW510-R12

 Score =  376 bits (966), Expect = e-108
 Identities = 235/637 (36%), Positives = 356/637 (55%), Gaps = 23/637 (3%)

Query: 13  LNDAQRQAVAATLGRQLVLAGAGSGKTRVLVHRIAWLIQVEQASPHSILSVTFTNKAAAE 72
           LN  Q  AV       LVLAGAGSGKT V+  +IA+LIQ  + +   I ++TFTNKAA E
Sbjct: 2   LNPQQLAAVEHCDTPLLVLAGAGSGKTSVITQKIAYLIQRRKLAASKIAAITFTNKAARE 61

Query: 73  MRQRIEQLLGI-NPAGMWVGTFHGLAHRLLRAHWQEARLVQNFQILDSDDQQRLIKRVMR 131
           MR+R+ +L+   + A + V TFH L  + L+     A L + F +LD+DD + ++K +  
Sbjct: 62  MRERVAKLISSEDAAALTVSTFHALGLKFLQIEHARAGLRRGFSVLDADDSEGIVKELAP 121

Query: 132 ELGLDEQKWPARQAQWFINGQKDEGLRPQHIQAGG----DLFLATMREVYTAYEQACERA 187
           +    +  +  R     ++  K+ GL P+   A      +L  AT   +Y  Y+      
Sbjct: 122 KGAKPDVLFGLRN---LLSRAKNGGLSPEEALAAARSPRELEAAT---IYELYQARLATF 175

Query: 188 GVIDFSELLLRALDLWRDHPGLLEHYQRRFRHVLVDEFQDTNAVQYAWLRLLARGGDSLM 247
             +DF +L+   L +        + ++ R R++LVDE+QDTN  QY  L++LA     + 
Sbjct: 176 NAVDFDDLIRLPLRILESDDECRDAWRERLRYLLVDEYQDTNDAQYRLLKVLAGERGHIT 235

Query: 248 AVGDDDQSIYGWRGAKIENIHQYTADFPDAEMIRLEQNYRSTGGILKAANALIANNSGRL 307
            VGDDDQSIY WRGA  ENI Q   D+P+  +I+LEQNYR    IL+AANALIA+N    
Sbjct: 236 CVGDDDQSIYAWRGANPENIDQLGRDWPNLRVIKLEQNYRCGRRILRAANALIAHNPHSH 295

Query: 308 GKELWTDMGEGEPLTLYAAYNEHDEARYVVETIESLVKQGNAR-NEIAILYRSNAQSRVL 366
            K+LW++  EG P+ +        EA  +     +L ++  AR +++AILYR N Q+RVL
Sbjct: 296 EKKLWSEHPEGAPIRVLECKEAEHEAEKIASIATTLAEKHKARWDDMAILYRGNFQARVL 355

Query: 367 EEALLRERIPYRIYGGQRFFERAEIKNAMAYLRLIEGRGNDAALERVINVPPRGIGEKTV 426
           E+AL   RIPY + G   F +RAE+K+ + YLRL+    +DAA  RV+NVP R IG  T+
Sbjct: 356 EKALRLARIPYHLTGALSFLDRAEVKDLLCYLRLLTNPSDDAAFLRVVNVPKREIGATTL 415

Query: 427 EAIREHARHSQLSMWEAMCQLIAAKALKGRAASALGAFIELIEGLAAKVVDMPLHTMTQT 486
           E + + A+    S+ +A       + L  R A+AL +F  L++ L +  +      + + 
Sbjct: 416 EKLGQLAQSRHSSLLDATRSDGVLRQLTPRPAAALASFANLLDELRSASLHQSAADLVEL 475

Query: 487 TIEQSGLITYHQEEKGEK--GQARVENLEELVSAARNFESTDEDA-DLSPLSAFLGHASL 543
            ++++G          +    + ++ NL+EL    R  +     A DL+   A L HA  
Sbjct: 476 ILKRTGYAAQIAAGTTDATVRERKLGNLKELADWFRAMQKGGNSAGDLAAQLALLSHA-- 533

Query: 544 EAGDTQADEHEDSIQLMTLHSAKGLEFPYVFLVGMEEGLFPHKMSLEEPGRLEEERRLAY 603
                  DE  +++++MTLH+AKGLEF +VF+ G E+G  PH+ +L+E GR++EERRL Y
Sbjct: 534 -----DRDEPGNAVRMMTLHAAKGLEFRFVFIAGCEDGTLPHEGALDE-GRVDEERRLMY 587

Query: 604 VGITRAMRQLVMTYAETRRLYGSETYNKVSRFVREIP 640
           VGITRA   L ++++   + YG    N+ SRF+ E+P
Sbjct: 588 VGITRAKELLTLSWSAKTKRYGEVHNNQPSRFLHELP 624