Pairwise Alignments

Query, 728 a.a., DNA-dependent ATPase I and helicase II, nucleotide Excision Repair Complex from Pseudomonas putida KT2440

Subject, 804 a.a., ATP-dependent DNA helicase PcrA from Xanthobacter sp. DMC5

 Score =  523 bits (1348), Expect = e-152
 Identities = 290/641 (45%), Positives = 408/641 (63%), Gaps = 15/641 (2%)

Query: 10  LNSLNDAQRQAVAATLGRQLVLAGAGSGKTRVLVHRIAWLIQVEQASPHSILSVTFTNKA 69
           L+ LN  QR+AV    G  LVLAGAG+GKTRVL  R+A ++   +A P  IL VTFTNKA
Sbjct: 30  LSGLNPEQREAVETLEGPLLVLAGAGTGKTRVLTARVAHILASGRAFPSQILVVTFTNKA 89

Query: 70  AAEMRQRIEQLLGINPAGM-WVGTFHGLAHRLLRAHWQEARLVQNFQILDSDDQQRLIKR 128
           A EM+ RI  ++G    GM W+GTFH +  R+LR H +   L   F ILD+DDQ RL+K+
Sbjct: 90  AREMKDRIHGMVGDQIEGMPWLGTFHSIGVRILRRHHELVGLKSGFTILDTDDQIRLLKQ 149

Query: 129 VMRELGLDEQKWPARQAQWFINGQKDEGLRPQHIQAGGDLFLATMRE--VYTAYEQACER 186
           ++    +DE++WPAR     I+G K+ GL P+ +  G     A  +   +Y AY+   + 
Sbjct: 150 LLAAENIDEKRWPARLLAATIDGWKNRGLSPKDVPPGEGAVFANGKGGMLYAAYQARLKA 209

Query: 187 AGVIDFSELLLRALDLWRDHPGLLEHYQRRFRHVLVDEFQDTNAVQYAWLRLLARGGDSL 246
              +DF +LLL  + L+R++P +L  Y RRF+++LVDE+QDTN  QY WLRLLA+G  ++
Sbjct: 210 LNAVDFGDLLLEGIRLFRENPDVLAEYHRRFKYLLVDEYQDTNVAQYLWLRLLAQGSKNV 269

Query: 247 MAVGDDDQSIYGWRGAKIENIHQYTADFPDAEMIRLEQNYRSTGGILKAANALIANNSGR 306
             VGDDDQSIYGWRGA+++NI ++ +DFP A++IRLE+NYRSTG IL +A  LIA+N GR
Sbjct: 270 CCVGDDDQSIYGWRGAEVDNILRFESDFPGAKVIRLERNYRSTGHILASAAHLIAHNEGR 329

Query: 307 LGKELWTDMGEGEPLTLYAAYNEHDEARYVVETIESLVKQGNARNEIAILYRSNAQSRVL 366
           LGK L+++  EGE +++  A++  +EAR V E IE+L + G+  +EIAIL R++ Q R  
Sbjct: 330 LGKTLFSEGDEGERVSVTGAWDSGEEARAVGEEIEALQRAGHRLSEIAILVRASFQMREF 389

Query: 367 EEALLRERIPYRIYGGQRFFERAEIKNAMAYLRLIEGRGNDAALERVINVPPRGIGEKTV 426
           E+  +   +PYR+ GG RF+ERAEI++A+AYLR +    +D A ER++NVP RGIG+ TV
Sbjct: 390 EDRFVTLGMPYRVIGGPRFYERAEIRDALAYLRCVNSTADDLAFERIVNVPKRGIGDATV 449

Query: 427 EAIREHARHSQLSMWEAMCQLIAAKALKGRAASALGAFIELIEGLAAKVVDMPLHTMTQT 486
           + I + AR + + + EA   L  ++ LK +    L   I+  E    +   M    + + 
Sbjct: 450 KQIHDVARAAGVPLQEAARVLTESEELKPKVRGTLRGLIQAFERWREQARTMSHTEIAEI 509

Query: 487 TIEQSGLITYHQEEKGEKGQARVENLEELVSAARNFESTDEDADLSPLSAFLGHASLEAG 546
            +++SG     Q+++  +   R+ENL+ELV +   FES         L  FL H SL   
Sbjct: 510 VLDESGYTEMWQKDRSAEAAGRLENLKELVRSMEPFES---------LPGFLEHISL-VM 559

Query: 547 DTQADEHEDSIQLMTLHSAKGLEFPYVFLVGMEEGLFPHKMSLEEPGR--LEEERRLAYV 604
           D      ED++Q+MTLHSAKGLEF  VFL G EEGLFPH+ +L+E G+  LEEERRLAYV
Sbjct: 560 DVDNGAGEDAVQVMTLHSAKGLEFDTVFLPGWEEGLFPHQRALDEQGKAGLEEERRLAYV 619

Query: 605 GITRAMRQLVMTYAETRRLYGSETYNKVSRFVREIPAGLVQ 645
           GITRA     + +A  RR++G       SRF+ E+P   VQ
Sbjct: 620 GITRARASARIWFASNRRIHGMWNSTVPSRFLDELPDAHVQ 660



 Score = 29.6 bits (65), Expect = 6e-04
 Identities = 14/34 (41%), Positives = 20/34 (58%)

Query: 668 LFANASIPQTAFNLGQRVQHAVFGEGVILNFEGS 701
           L A++S   +AF  G+RV H  FG G I   +G+
Sbjct: 749 LVASSSASSSAFKRGERVFHIKFGYGEITGIDGN 782