Pairwise Alignments

Query, 728 a.a., DNA-dependent ATPase I and helicase II, nucleotide Excision Repair Complex from Pseudomonas putida KT2440

Subject, 669 a.a., ATP-dependent DNA helicase Rep from Pseudomonas simiae WCS417

 Score =  387 bits (994), Expect = e-111
 Identities = 245/646 (37%), Positives = 359/646 (55%), Gaps = 26/646 (4%)

Query: 10  LNSLNDAQRQAVAATLGRQLVLAGAGSGKTRVLVHRIAWLIQVEQASPHSILSVTFTNKA 69
           ++ LN  Q++AV    G  LVLAGAGSGKT V+  +IA LIQ        I+++TFTNKA
Sbjct: 1   MSRLNPRQQEAVNYVGGPLLVLAGAGSGKTSVITRKIAHLIQQCGIRAQYIVAMTFTNKA 60

Query: 70  AAEMRQRIEQLL-GINPAGMWVGTFHGLAHRLLRAHWQEARLVQNFQILDSDDQQRLIKR 128
           A EM++R+  LL G    G+ V TFH L   ++R           F I D  D + L+  
Sbjct: 61  AREMKERVGTLLKGGEGRGLTVCTFHNLGLNIIRKEHARLGYKPGFSIFDETDVKSLMTD 120

Query: 129 VMREL-----GLDEQKWPARQAQWFINGQKDEGLRP-QHIQAGGDLFLATMREVYTAYEQ 182
           +M++      G+DE K         I   K++ + P Q ++   +    T   VYT Y++
Sbjct: 121 IMQKEYAGDDGVDEIKN-------MIGAWKNDLILPAQALENARNPKEQTAAIVYTHYQR 173

Query: 183 ACERAGVIDFSELLLRALDLWRDHPGLLEHYQRRFRHVLVDEFQDTNAVQYAWLRLLARG 242
             +    +DF +L+L  + L+ +H  +LE +Q + R++LVDE+QDTNA QY  +++L   
Sbjct: 174 TLKAFNAVDFDDLILLPVKLFEEHADILEKWQNKVRYLLVDEYQDTNASQYLLVKMLIGK 233

Query: 243 GDSLMAVGDDDQSIYGWRGAKIENIHQYTADFPDAEMIRLEQNYRSTGGILKAANALIAN 302
            +    VGDDDQSIY WRGA+ EN+     D+P  +++ LEQNYRST  IL+ AN LI+N
Sbjct: 234 RNQFTVVGDDDQSIYAWRGARPENLMLLKDDYPSLKVVMLEQNYRSTSRILRCANVLISN 293

Query: 303 NSGRLGKELWTDMGEGEPLTLYAAYNEHDEA-RYVVETIESLVKQGNARNEIAILYRSNA 361
           N     K+LW++MG G+ + +    NE  EA R  VE +   ++     ++ AILYR N 
Sbjct: 294 NPHEFEKQLWSEMGHGDEIRVIRCRNEDAEAERVAVEILSLHLRTDRPYSDFAILYRGNY 353

Query: 362 QSRVLEEALLRERIPYRIYGGQRFFERAEIKNAMAYLRLIEGRGNDAALERVINVPPRGI 421
           Q++++E  L   ++PYR+ GG  FF R E+K+ MAY RLI    +D A  RVINVP R I
Sbjct: 354 QAKLIELKLQHHQVPYRLSGGNSFFGRQEVKDLMAYFRLIVNPDDDNAFLRVINVPRREI 413

Query: 422 GEKTVEAIREHARHSQLSMWEAMCQLIAAKALKGRAASALGAFIELI----EGLAAKVVD 477
           G  T+E +  +A   ++SM+ A  ++   + L  R    L  F   +    E  A +   
Sbjct: 414 GSTTLEKLGNYATERKISMYAATDEIGLGEHLDSRFTDRLARFKRFMDKVREQCAGEDPI 473

Query: 478 MPLHTMTQTTIEQSGLITYHQEEKGEKGQARVENLEELVSAARNFESTDEDADLSPLSAF 537
             L +M      ++ L T    +K      R+ N+  L+ A +N    DED +++   A 
Sbjct: 474 SALRSMVMDIDYENWLRTNSSSDKA--ADYRMSNVWFLIEALKNTLEKDEDGEMTVEDA- 530

Query: 538 LGHASLEAGDTQADEHED---SIQLMTLHSAKGLEFPYVFLVGMEEGLFPHKMSLEEPGR 594
           +G   L     +  E ED    +Q+MTLH++KGLEFPYVF++GMEE + PH+ S+ E   
Sbjct: 531 IGKLVLRDMLERQQEEEDGAEGVQMMTLHASKGLEFPYVFIMGMEEEILPHRSSI-EADT 589

Query: 595 LEEERRLAYVGITRAMRQLVMTYAETRRLYGSETYNKVSRFVREIP 640
           +EEERRLAYVGITRA + L  T+A  R+ YG       SRF+ E+P
Sbjct: 590 IEEERRLAYVGITRARQTLAFTFAAKRKQYGEIIDCAPSRFLDELP 635