Pairwise Alignments

Query, 728 a.a., DNA-dependent ATPase I and helicase II, nucleotide Excision Repair Complex from Pseudomonas putida KT2440

Subject, 758 a.a., ATP-dependent DNA helicase UvrD/PcrA (EC 3.6.4.12) from Sphingobium sp. HT1-2

 Score =  528 bits (1360), Expect = e-154
 Identities = 308/758 (40%), Positives = 451/758 (59%), Gaps = 56/758 (7%)

Query: 10  LNSLNDAQRQAVAATLGRQLVLAGAGSGKTRVLVHRIAWLIQVEQASPHSILSVTFTNKA 69
           L  LN+ QR+AV  T G  LVLAGAG+GKT  L  R+A L+  ++A P  IL+VTFTNKA
Sbjct: 14  LKGLNEPQREAVLTTEGPVLVLAGAGTGKTAALTARLAHLVATQRAWPSEILAVTFTNKA 73

Query: 70  AAEMRQRIEQLLGINPAGM-WVGTFHGLAHRLLRAHWQEARLVQNFQILDSDDQQRLIKR 128
           A EMR+R+ +++G    GM W+GTFH +A ++LR H +   L  NF ILD+DDQ RL+K+
Sbjct: 74  AREMRERVGRMIGPAVEGMPWLGTFHAIAAKMLRRHAELVGLQSNFTILDTDDQLRLMKQ 133

Query: 129 VMRELGLDEQKWPARQAQWFINGQKDEGLRPQHIQAGGDLFLATMR--EVYTAYEQACER 186
           +++  G+DE++WPARQ    I+  K++GL P+ + AG     A  +  ++Y AY+     
Sbjct: 134 LIQAEGIDEKRWPARQLAGLIDQWKNKGLTPEEVGAGEAEGYAHGKGQKLYAAYQARLRE 193

Query: 187 AGVIDFSELLLRALDLWRDHPGLLEHYQRRFRHVLVDEFQDTNAVQYAWLRLLARGGDSL 246
               DF +LLL +L + + H  +LE YQ+RF++++VDE+QDTN+ QY WLRLLA+   ++
Sbjct: 194 VNACDFGDLLLHSLTILKRHRDVLEQYQQRFKYIMVDEYQDTNSSQYLWLRLLAQTRKNI 253

Query: 247 MAVGDDDQSIYGWRGAKIENIHQYTADFPDAEMIRLEQNYRSTGGILKAANALIANNSGR 306
             VGDDDQSIY WRGA++ NI ++  DFP A ++RLEQNYRST  IL AA+ +IA N  R
Sbjct: 254 CCVGDDDQSIYSWRGAEVANILRFEKDFPGAVIVRLEQNYRSTPHILGAASGVIAENGNR 313

Query: 307 LGKELWTDMGEGEPLTLYAAYNEHDEARYVVETIESLVKQGNARNEIAILYRSNAQSRVL 366
           LGK LWTD+  GE + +   ++  +EAR V + IE++ + G + +E+AIL R+  Q+R  
Sbjct: 314 LGKTLWTDIDVGEKVRVLGVWDGPEEARRVGDEIEAIARAGGSLDEVAILVRAQHQTREF 373

Query: 367 EEALLRERIPYRIYGGQRFFERAEIKNAMAYLRLIEGRGNDAALERVINVPPRGIGEKTV 426
           E+  ++  +PYRI GG RF+ERAEI++A+AYLRL+    +D A ER++NVP RG+G+K V
Sbjct: 374 EDRFIQIGLPYRIVGGFRFYERAEIRDALAYLRLVNQPADDLAFERIVNVPKRGLGDKAV 433

Query: 427 EAIREHARHSQLSMWEAMCQLIAAKALKGRAASALGAFIELIEGLAAKVVDMPLHTMTQT 486
           E +   AR   + +  A  +++    L  +A  +LGAFI  +     +   +P   + + 
Sbjct: 434 EKLHRLARAEGIPLALAAARILDTDELTPQARRSLGAFIGDLARWRDRAAQLPHAELARQ 493

Query: 487 TIEQSGLITYHQEEKGEKGQARVENLEELVSAARNFESTDEDADLSPLSAFLGHASLEAG 546
            +++SG     Q E+  +   R+ENL EL  A   +E+         L AFL H SL   
Sbjct: 494 ILDESGYTATLQAERSTESAGRLENLSELTRAMEEYET---------LGAFLEHVSL-VM 543

Query: 547 DTQADEHEDSIQLMTLHSAKGLEFPYVFLVGMEEGLFPHKMSLEEPG--RLEEERRLAYV 604
           D +A + E  + +MT+H+AKGLEF  VFL G EEG+FP + +L+E G   LEEERRLAYV
Sbjct: 544 DNEAQQDEQKLTIMTIHAAKGLEFDNVFLAGWEEGIFPSQRALDEGGLNSLEEERRLAYV 603

Query: 605 GITRAMRQLVMTYAETRRLYGSETYNKVSRFVREIPAGLV-QEVRLSNSVS--------- 654
            ITRA ++  + +A  RR+YG  T +  SRFV E+P   V +E  +S   S         
Sbjct: 604 AITRARKRCTILHAANRRIYGQWTSSIPSRFVGELPPEHVDEESSMSGGASLWRANWSER 663

Query: 655 -RPFG----------GAKTATNSNLFANASI---------------PQTAFNLGQRVQHA 688
             PF           G + A +S  F+   +                +   ++GQRV H 
Sbjct: 664 DDPFANVARGSSRGPGWQRAQSSGQFSREPVRIVEARTSAVSLGNKGRDDVSVGQRVFHQ 723

Query: 689 VFGEGVILNFEGSGAQARVQVNF-AEGSKWLMLGYAKL 725
            FG G I   EG+    +++++F   G K +M  +  L
Sbjct: 724 KFGYGTIAAIEGN----KLEIDFETAGRKRVMDSFVTL 757