Pairwise Alignments

Query, 728 a.a., DNA-dependent ATPase I and helicase II, nucleotide Excision Repair Complex from Pseudomonas putida KT2440

Subject, 669 a.a., helicase a single-stranded DNA dependent ATPase from Pseudomonas putida KT2440

 Score =  397 bits (1019), Expect = e-114
 Identities = 246/644 (38%), Positives = 366/644 (56%), Gaps = 22/644 (3%)

Query: 10  LNSLNDAQRQAVAATLGRQLVLAGAGSGKTRVLVHRIAWLIQVEQASPHSILSVTFTNKA 69
           ++ LN  Q++A     G  LVLAGAGSGKT V+  +IA LIQ        I+++TFTNKA
Sbjct: 1   MSRLNPRQQEARDYVGGPLLVLAGAGSGKTSVITRKIAHLIQNCGIRAQYIVAMTFTNKA 60

Query: 70  AAEMRQRIEQLLGINPA-GMWVGTFHGLAHRLLRAHWQEARLVQNFQILDSDDQQRLIKR 128
           A EM++R+  LL      G+ V TFH L   ++R   +       F I D  D + L+  
Sbjct: 61  AREMKERVATLLRPGEGRGLTVCTFHNLGLNIIRKEHERLGYKPGFSIFDESDIKALLSD 120

Query: 129 VMREL-----GLDEQKWPARQAQWFINGQKDEGLRPQHIQAGGDLFLATMREVYTAYEQA 183
           +M++      G+DE K       W    + D  L P+ ++   +    T   VYT Y++ 
Sbjct: 121 IMQKEYSGDDGIDEIK--NMIGAW----KNDLVLPPEALEKARNPREQTAAIVYTHYQRT 174

Query: 184 CERAGVIDFSELLLRALDLWRDHPGLLEHYQRRFRHVLVDEFQDTNAVQYAWLRLLARGG 243
            +    +DF +L+L+ + L+++HP +LE +Q R R++LVDE+QDTNA QY  +++L    
Sbjct: 175 LKAFNAVDFDDLILQPVKLFQEHPEVLERWQNRVRYLLVDEYQDTNASQYLLVKMLIGMR 234

Query: 244 DSLMAVGDDDQSIYGWRGAKIENIHQYTADFPDAEMIRLEQNYRSTGGILKAANALIANN 303
           +    VGDDDQSIY WRGA+ EN+     D+P  +++ LEQNYRST  IL+ AN LIANN
Sbjct: 235 NQFTVVGDDDQSIYAWRGARPENLMLLKEDYPSLKIVMLEQNYRSTSRILRCANVLIANN 294

Query: 304 SGRLGKELWTDMGEGEPLTLYAAYNEHDEA-RYVVETIESLVKQGNARNEIAILYRSNAQ 362
                K+LW++MG G+ + +    NE  EA R  +E +   ++     ++ AILYR N Q
Sbjct: 295 PHAFEKQLWSEMGVGDEIRVIRCKNEEAEAERVAMEILTLHLRTNRPYSDFAILYRGNYQ 354

Query: 363 SRVLEEALLRERIPYRIYGGQRFFERAEIKNAMAYLRLIEGRGNDAALERVINVPPRGIG 422
           ++++E  L   ++PYR+ GG  FF R E+K+ MAYLRL+    +D A  RVINVP R IG
Sbjct: 355 AKLIELKLQHHQVPYRLSGGNSFFGRQEVKDLMAYLRLLVNPDDDNAYLRVINVPRREIG 414

Query: 423 EKTVEAIREHARHSQLSMWEAMCQLIAAKALKGRAASALGAFIELIEGLAAKV-VDMP-- 479
             T+E +  +A    +SM+ A  +L   + L  R    L  F   ++G+  KV ++ P  
Sbjct: 415 STTLEKLGNYATERGISMYAASEELGLGEHLDARYTERLQRFKHWLDGVRHKVALEDPIA 474

Query: 480 -LHTMTQTTIEQSGLITYHQEEKGEKGQARVENLEELVSAARNFESTDEDADLSPLSAFL 538
            LH M +    ++ +    Q    +  + R+ N+  LV A +N    DE+ D++   A  
Sbjct: 475 ALHEMIRDIDYENWI--RQQTASDKAAEFRISNVWFLVEALKNTLEKDEEGDMTIEDAIG 532

Query: 539 GHASLEAGDTQADEHE--DSIQLMTLHSAKGLEFPYVFLVGMEEGLFPHKMSLEEPGRLE 596
                +  + Q +E E  + +Q+MTLH++KGLEFPYVF++GMEE + PH+ S+ E   +E
Sbjct: 533 KLVLRDMLERQQEEEENAEGVQMMTLHASKGLEFPYVFIMGMEEEILPHRSSI-EADTIE 591

Query: 597 EERRLAYVGITRAMRQLVMTYAETRRLYGSETYNKVSRFVREIP 640
           EERRLAYVGITRA + L  T+A  R+ YG       SRF+ E+P
Sbjct: 592 EERRLAYVGITRARQTLAFTFAAKRKQYGEIIDCTPSRFLDELP 635