Pairwise Alignments

Query, 728 a.a., DNA-dependent ATPase I and helicase II, nucleotide Excision Repair Complex from Pseudomonas putida KT2440

Subject, 637 a.a., ATP-dependent helicase from Magnetospirillum magneticum AMB-1

 Score =  211 bits (538), Expect = 7e-59
 Identities = 183/624 (29%), Positives = 266/624 (42%), Gaps = 83/624 (13%)

Query: 13  LNDAQRQAVAATLGRQLVLAGAGSGKTRVLVHRIAWLIQVEQASPHSILSVTFTNKAAAE 72
           L+  QR A  A     LVLAG G+GKT  LV R   L++ + A+P  I   TFT +AA E
Sbjct: 13  LDPEQRLAAEAEADSVLVLAGPGTGKTTTLVGRYVHLLE-QGAAPARIFVSTFTARAAEE 71

Query: 73  MRQRIEQLLGINPAG--------MWVGTFHGLAHRLLRAHWQEARLVQNFQILDSDDQQR 124
           +R RI   L              M +GT HG+A RLL+ H         F++ D     R
Sbjct: 72  LRGRIGARLETRGGDFDAERFRRMPIGTLHGMALRLLQRHPPPG--CPRFRVFDEQACSR 129

Query: 125 LIKRVMRELGLDEQKWPARQAQWFINGQKDEGLRPQ----HIQAGGDLFLATMREVYTAY 180
           +I R    LG D      R+        KD  + P       +   D  L    E Y  Y
Sbjct: 130 VIARHRLYLGDD-----VRKPTDVFGAYKDRLMSPAAALAEAKVRNDATLVEAAEAYGRY 184

Query: 181 EQACERAGVIDFSELLLRALDLWRDHPGLLEHYQRRFRHVLVDEFQDTNAVQYAWLRLLA 240
           ++A    G  DF +L++  +    +           F H+L+DE+QD N  Q   LRLL 
Sbjct: 185 QRALAEEGGFDFGDLIMELVRGLEEDEAYRARIAGFFDHLLIDEYQDINPAQERMLRLLR 244

Query: 241 RGGDSLMAVGDDDQSIYGWRGAKIENIHQYTADFPDAEMIRLEQNYRSTGGILKAANALI 300
             G  L AVGDDDQ +Y WR A    I  +   +PD  + RL +NYRS+  I+ AA ALI
Sbjct: 245 SEGARLWAVGDDDQCLYAWRSADPAFILGFETAWPDPALFRLSRNYRSSATIVNAAGALI 304

Query: 301 ANNSGRLGKELWTDMGEGEPLTLYAAYNEHDEARYVVETIESLVKQGNARNEIAILYRSN 360
             N  R  K+          LT+    ++ DEA YV+  ++ L  +G   NE+A+LYR+ 
Sbjct: 305 GANRRRHAKDQVPHSASRLALTIAGLDDDEDEADYVLRVVKGLSGRGMPWNEMAVLYRAG 364

Query: 361 AQSRVLEEALLRERIPYRIYGGQRFFERAEIKNAMAYLRLIEGRGNDAALERVINVPPRG 420
                ++  L    IP  + G   F++   ++      RL+    +  A   +      G
Sbjct: 365 HVGSRIQIRLAEAGIPLVVRGAGEFWQLGPVRLTAGLARLLSNPQDMDARAML------G 418

Query: 421 IGEKTVEAIREHARHSQLSM-WEAMCQLIAAKALKGRAASALGAFIELIEGLAAKVVDMP 479
            G++  + +++        + W A+C+ +      GR  SA                   
Sbjct: 419 HGKRVDKLLQQAPEKIDADVPWPALCRQV------GRLVSA------------------- 453

Query: 480 LHTMTQTTIEQSGLITYHQEEKGEKGQARVENLEELVSAARNFESTDEDADLSPLSAFLG 539
                                      AR    E L      F + D  A+   ++AF+ 
Sbjct: 454 --------------------------TARPPGEEGLQWRDLAFTAADLAAECGTVAAFIA 487

Query: 540 HASLEAGD-TQADEHEDSIQLMTLHSAKGLEFPYVFLVGMEEGLFPHKMSLEEPGRLEEE 598
               +     +A+   D++ L T+H AKGLE+  V + G E  L PH+ S +    LEEE
Sbjct: 488 LMEEQRRSLRRAESGGDAVVLSTIHGAKGLEWSAVVVAGCEADLMPHESSPD----LEEE 543

Query: 599 RRLAYVGITRAMRQLVMTYAETRR 622
           RRL YV  TRA R LV+++A  RR
Sbjct: 544 RRLMYVAATRAKRWLVLSFAAERR 567