Pairwise Alignments

Query, 728 a.a., DNA-dependent ATPase I and helicase II, nucleotide Excision Repair Complex from Pseudomonas putida KT2440

Subject, 674 a.a., DNA helicase Rep from Dickeya dianthicola ME23

 Score =  396 bits (1017), Expect = e-114
 Identities = 246/640 (38%), Positives = 359/640 (56%), Gaps = 20/640 (3%)

Query: 13  LNDAQRQAVAATLGRQLVLAGAGSGKTRVLVHRIAWLIQVEQASPHSILSVTFTNKAAAE 72
           +N +Q+ AV    G  LVLAGAGSGKTRV+  +IA LI+        I +VTFTNKAA E
Sbjct: 3   MNPSQQHAVEFVTGPCLVLAGAGSGKTRVITQKIAHLIRGCGYQARHIAAVTFTNKAARE 62

Query: 73  MRQRIEQLLGINPA-GMWVGTFHGLAHRLLRAHWQEARLVQNFQILDSDDQQRLIKRVMR 131
           M++R+ Q LG     G+ + TFH L   +++  +    +  NF + D  DQ  L+K  + 
Sbjct: 63  MKERVAQTLGRKETRGLLIATFHTLGLEIIKREYAALGMKSNFSLFDDQDQLALLKE-LT 121

Query: 132 ELGLDEQKWPARQAQWFINGQKDEGLRPQHIQAGG----DLFLATMREVYTAYEQACERA 187
           EL L   K   +Q    ++  K++ + P    A      D   A    +Y  + +AC   
Sbjct: 122 ELWLQNDKDLLQQLVSALSNWKNDLIDPAQAAALARSEQDRLFAHCYRLYDEHLRACN-- 179

Query: 188 GVIDFSELLLRALDLWRDHPGLLEHYQRRFRHVLVDEFQDTNAVQYAWLRLLARGGDSLM 247
            V+DF +L+L    L + +  + E +Q R R++LVDE+QDTN  QY  ++LL        
Sbjct: 180 -VLDFDDLILLPTLLLKRNEEVRERWQNRLRYLLVDEYQDTNTSQYELIKLLVGSRARFT 238

Query: 248 AVGDDDQSIYGWRGAKIENIHQYTADFPDAEMIRLEQNYRSTGGILKAANALIANNSGRL 307
            VGDDDQSIY WRGA+ +N+     DFP  ++I+LEQNYRS+G ILKAAN LIANN    
Sbjct: 239 VVGDDDQSIYSWRGARPQNLSLLQQDFPQLQVIKLEQNYRSSGRILKAANILIANNPHVF 298

Query: 308 GKELWTDMGEGEPLTLYAAYNE-HDEARYVVETIESLVKQGNARNEIAILYRSNAQSRVL 366
            K L++++G GE L +  A NE H+  R V E I     +     + AILYR N QSR+ 
Sbjct: 299 EKRLYSELGYGEELKIITANNEDHEAERVVGELIAHHFIRKTQYGDYAILYRGNHQSRLF 358

Query: 367 EEALLRERIPYRIYGGQRFFERAEIKNAMAYLRLIEGRGNDAALERVINVPPRGIGEKTV 426
           E+ L++ RIPYRI GG  FF R EIK+ +AYLR++    +D+A  RV+N P R IG  T+
Sbjct: 359 EKVLMQNRIPYRISGGTSFFSRPEIKDLLAYLRVLTNPEDDSAFLRVVNTPKREIGPATL 418

Query: 427 EAIREHARHSQLSMWEAMCQLIAAKALKGRAASALGAFIELIEGLAAKVVDMPLHTMTQT 486
           + + E A     S++ A   +  ++ L GR   +L  F + +  +A      P+  +   
Sbjct: 419 QKLGEWANQRNRSLFNASFDMGLSQTLSGRGLESLQRFTQWMGDIARLAEPEPVKAVRDL 478

Query: 487 T--IEQSGLITYHQEEKGEKGQARVENLEELVS-AARNFESTDEDADLS---PLSAFLGH 540
              ++    + Y      +  + R++N+  L +      E +D D  ++    ++ F   
Sbjct: 479 IHGLDYESWL-YETSPSPKAAEMRMKNVNTLFTWMTEMLEGSDLDEPMTLTQVVTRFTLR 537

Query: 541 ASLEAGDTQADEHEDSIQLMTLHSAKGLEFPYVFLVGMEEGLFPHKMSLEEPGRLEEERR 600
             +E    +A+E  + +QLMTLH++KGLEFPYV+LVGMEEGL PH+ S++E   ++EERR
Sbjct: 538 DMMER--NEAEEELEQVQLMTLHASKGLEFPYVYLVGMEEGLLPHQTSIDE-DNIDEERR 594

Query: 601 LAYVGITRAMRQLVMTYAETRRLYGSETYNKVSRFVREIP 640
           LAYVGITRA ++L  T    RR YG     + SRF+ E+P
Sbjct: 595 LAYVGITRAQKELTFTLCRERRQYGELIRPEPSRFLLELP 634