Pairwise Alignments

Query, 728 a.a., DNA-dependent ATPase I and helicase II, nucleotide Excision Repair Complex from Pseudomonas putida KT2440

Subject, 752 a.a., Superfamily I DNA and RNA helicases from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  486 bits (1251), Expect = e-141
 Identities = 288/751 (38%), Positives = 430/751 (57%), Gaps = 35/751 (4%)

Query: 10  LNSLNDAQRQAVAATLGRQLVLAGAGSGKTRVLVHRIAWLIQVEQASPHSILSVTFTNKA 69
           L  LN  QR+AV  T G  +++AGAGSGKTRVL  RIA LI+ +   P  IL++TFTNKA
Sbjct: 4   LEGLNPPQREAVEHTEGPLMIIAGAGSGKTRVLTFRIAHLIRAKNVDPFQILALTFTNKA 63

Query: 70  AAEMRQRIEQLLGINPAGMWVGTFHGLAHRLLRAHWQEARLVQNFQILDSDDQQRLIKRV 129
           A+EMR RIE+L+G+     W+GTFH +  ++LR   ++     NF I D+DD + LIK +
Sbjct: 64  ASEMRNRIERLIGLEARNTWMGTFHSIFAKILRVESEKLGFPSNFTIYDTDDSKSLIKSI 123

Query: 130 MRELGLDEQKWPARQAQWFINGQK------DEGLRPQHIQAGGDLFLAT-MREVYTAYEQ 182
           ++E  LD++ +        I+G K      +  +   +I+A  +  +   M E+Y AY++
Sbjct: 124 VKEKRLDDKVYKPNTVLSRISGAKNRLISWENYINDPYIKADDEAAMKPRMGEIYRAYQK 183

Query: 183 ACERAGVIDFSELLLRALDLWRDHPGLLEHYQRRFRHVLVDEFQDTNAVQYAWLRLLARG 242
              ++  +DF +LL     L+RDHP +L  YQ+RFR+VLVDEFQDTN  QY   + LA  
Sbjct: 184 RLFKSSAMDFDDLLFNTNVLFRDHPDVLNKYQQRFRYVLVDEFQDTNLSQYLITKKLAAV 243

Query: 243 GDSLMAVGDDDQSIYGWRGAKIENIHQYTADFPDAEMIRLEQNYRSTGGILKAANALIAN 302
             ++  VGDD QSIY +RGA I+NI  +  D+PD  +++LEQNYRST  I++AAN++I  
Sbjct: 244 HQNICVVGDDAQSIYAFRGADIQNILNFEKDYPDLHVVKLEQNYRSTKNIVEAANSIIEK 303

Query: 303 NSGRLGKELWTDMGEGEPLTLYAAYNEHDEARYVVETI-ESLVKQGNARNEIAILYRSNA 361
           N  +L K +WT  G G+ + L  + ++++E R V  TI E    +    ++ AILYR+N+
Sbjct: 304 NKAQLKKNVWTQNGNGDLIELIKSASDNEEGRMVASTIFEEKNNKKLQNSDFAILYRTNS 363

Query: 362 QSRVLEEALLRERIPYRIYGGQRFFERAEIKNAMAYLRLIEGRGNDAALERVINVPPRGI 421
           QSR LEEAL +  I Y+I GG  F++R EIK+ MAY R +  + ++ A +R+IN P RGI
Sbjct: 364 QSRALEEALRKMNISYKIVGGLSFYQRKEIKDLMAYFRYVVNQDDEEAFKRIINYPKRGI 423

Query: 422 GEKTVEAIREHARHSQLSMWEAMCQLIAAKALKGRAASALGAFIELIEGLAAKVVDMPLH 481
           G  +VE +   A    + +W+ +    ++  L GRA++++  F  +I+    +V     +
Sbjct: 424 GLSSVEKMMVAAYEHDIPLWQVVTN--SSSFLSGRASNSVSDFATMIKSFQMEVERKDAY 481

Query: 482 TMTQTTIEQSGLITYHQEEKGEKGQARVENLEELVSAARNFESTDEDADLSPLSAFLGHA 541
               T  +QSGL+    E+K  +G  R EN++EL++A + +    E+ D + L AFL   
Sbjct: 482 EAASTIAKQSGLLRELYEDKTIEGLNRYENVQELLNAIKEYVDNPENEDKN-LGAFLQEI 540

Query: 542 SLEAGDTQADEHEDSIQLMTLHSAKGLEFPYVFLVGMEEGLFPHKMSLEEPGRLEEERRL 601
           +L   + +  +  D++ LMT+HS+KGLEF  VF+VG+EE LFP +M ++    LEEERRL
Sbjct: 541 ALLTDNDRDKDEMDAVTLMTIHSSKGLEFRQVFVVGLEEDLFPSQMMMQSREDLEEERRL 600

Query: 602 AYVGITRAMRQLVMTYAETRRLYGSETYNKVSRFVREIPAGLVQEV-------------R 648
            YV  TRAM +L ++YA TR  +G     + SRF+ EI    ++               R
Sbjct: 601 FYVATTRAMEKLYLSYAITRYRFGRLLNCEPSRFLEEIDPSCIRVTKRRGQQPTGSHFGR 660

Query: 649 LSNSVSRP-FGGAKT-ATNSNLFANASIPQTAFN--------LGQRVQHAVFGEGVILNF 698
            ++S  R  F G KT +   N  A    P   F          G +V+H  FG G +L  
Sbjct: 661 NNDSEGRSGFVGLKTPSVRKNTTAKVHTPSPDFKPSNTSNLAAGMKVEHPKFGFGKVLKV 720

Query: 699 EGSGAQARVQVNFAE-GSKWLMLGYAKLEAV 728
           E  G   +  + F   G K L+L +AKL  V
Sbjct: 721 EVEGLNKKATIGFDNFGEKTLLLSFAKLRIV 751