Pairwise Alignments

Query, 728 a.a., DNA-dependent ATPase I and helicase II, nucleotide Excision Repair Complex from Pseudomonas putida KT2440

Subject, 688 a.a., ATP-dependent DNA helicase from Agrobacterium fabrum C58

 Score =  276 bits (705), Expect = 3e-78
 Identities = 221/677 (32%), Positives = 333/677 (49%), Gaps = 70/677 (10%)

Query: 10  LNSLNDAQRQAV--------AATLGRQLVLAGAGSGKTRVLVHRIAWLIQVEQASPHSIL 61
           L+ LN+ QR+AV          T G  L++AGAGSGKT  L HR+A LI V  A P  IL
Sbjct: 6   LDKLNEQQRKAVEHGVGLADGETAGPLLIIAGAGSGKTNTLAHRVAHLI-VNGADPRRIL 64

Query: 62  SVTFTNKAAAEMRQRIE----QLLGINPAGM-----WVGTFHGLAHRLLRAHWQEARLVQ 112
            +TF+ +AA+EM +R+E    Q++G N A M     W GTFHG+  RLLR + ++  L  
Sbjct: 65  LMTFSRRAASEMSRRVERICKQVIGANSAIMTDALAWSGTFHGIGARLLRIYAEQIGLNI 124

Query: 113 NFQILDSDDQQRLIKRVMRELGLD--EQKWPARQAQWFINGQKDEGLRP------QHIQA 164
           +F I D +D   L+  V  ELG    E ++P +     I  +      P      QH   
Sbjct: 125 DFTIHDREDSADLMNLVRHELGFSKTESRFPTKGTCLAIYSRAVNSQTPLKDILRQHYPW 184

Query: 165 GGDLFLATMREVYTAYEQACERAGVIDFSELLLRALDLWRDHPGLLEHYQRRFRHVLVDE 224
             D + + ++E++ AY +A +   V+D+ +LLL    +  D P L +    RF HV+VDE
Sbjct: 185 VAD-WQSELKELFAAYVEAKQIQNVLDYDDLLLYWAQMVSD-PILADDIGNRFDHVMVDE 242

Query: 225 FQDTNAVQYAWLRLLARGGDSLMAVGDDDQSIYGWRGAKIENIHQYTADF-PDAEMIRLE 283
           +QDTN +Q + L  +  GG  L  VGDD QSIY +R A + NI  + A F P A++I L+
Sbjct: 243 YQDTNRLQASVLMAMKPGGRGLTVVGDDAQSIYSFRAATVRNILDFPACFNPAADIITLD 302

Query: 284 QNYRSTGGILKAANALIANNSGRLGKELWTDMGEGEPLTLYAAYNEHDEARYVVETIESL 343
           +NYRST  IL AAN +I     R  K LWT+    E   L    +E ++A ++++ I + 
Sbjct: 303 RNYRSTQPILAAANGVIDLARERFTKNLWTERQSLERPKLVTVKDETEQANFIIDQILAN 362

Query: 344 VKQGNARNEIAILYRSNAQSRVLEEALLRERIPYRIYGGQRFFERAEIKNAMAYLRLIEG 403
            + G    + A+L+R+++ S  LE  L R  IP+  +GG +F + A +K+ +A LR  + 
Sbjct: 363 RETGTTLKQQAVLFRTSSHSGPLEVELTRRNIPFVKFGGLKFLDSAHVKDMLAVLRFAQN 422

Query: 404 RGNDAALERVINVPPRGIGEKTVEAIREHARHSQLSMWEAMCQLIAAKALKGRAASALGA 463
             +  A  R++ + P GIG K    I +      ++        +A      +      A
Sbjct: 423 PRDRVAGFRLLQMLP-GIGPKKAGNILD-----TIAPDPEPLLALAEIPPPPKTGDDWTA 476

Query: 464 FIELIEGLAAKVVDMPLHTMTQTTIEQSGLITY----HQEEKGEKGQARVENLEELVSAA 519
           F +L+ GL       P          + GL       H E   E    R  +L++L   A
Sbjct: 477 FTQLLVGLRRGPNGWP---------GEIGLARLWYEPHLERIHEDADTRKADLQQLEQIA 527

Query: 520 RNFESTDEDADLSPLSAFLGHASLEAGDTQADE------HEDSIQLMTLHSAKGLEFPYV 573
             + S +          FL   +L+  D  +D+       ED + L T+HSAKG E+  V
Sbjct: 528 GGYPSRER---------FLTELTLDPPDATSDQAGVPLLDEDYLSLSTIHSAKGQEWRSV 578

Query: 574 FLVGMEEGLFPHKMSLEEPGRLEEERRLAYVGITRAMRQLVMTYAETRRLYGSETYNKVS 633
           F++ + +G  P  + +     LEEERRL YV +TRA   L  +    +R +     ++  
Sbjct: 579 FILNVVDGCIPSDLGVGTSQELEEERRLLYVAMTRAKDNL--SLITPQRFFTGGQSSQGD 636

Query: 634 RFV-----REIPAGLVQ 645
           R V     R IPA L+Q
Sbjct: 637 RHVYAARTRFIPATLLQ 653