Pairwise Alignments

Query, 728 a.a., DNA-dependent ATPase I and helicase II, nucleotide Excision Repair Complex from Pseudomonas putida KT2440

Subject, 824 a.a., DNA helicase II from Agrobacterium fabrum C58

 Score =  499 bits (1285), Expect = e-145
 Identities = 285/661 (43%), Positives = 410/661 (62%), Gaps = 22/661 (3%)

Query: 10  LNSLNDAQRQAVAATLGRQLVLAGAGSGKTRVLVHRIAWLIQVEQASPHSILSVTFTNKA 69
           L+ LN  QR+AV    G  LVLAGAG+GKTRVL  RIA ++   +A P  IL+VTFTNKA
Sbjct: 53  LSGLNPEQREAVETLDGPVLVLAGAGTGKTRVLTTRIAHILATGRAYPSQILAVTFTNKA 112

Query: 70  AAEMRQRIEQLLGINPAGM-WVGTFHGLAHRLLRAHWQEARLVQNFQILDSDDQQRLIKR 128
           A EM++RI  L+G    GM W+GTFH +  +LLR H +   L  +F ILD+DD  RLIK+
Sbjct: 113 AREMKERIGVLVGGAVEGMPWLGTFHSIGVKLLRRHAELIGLKSDFTILDTDDVVRLIKQ 172

Query: 129 VMRELGLDEQKWPARQAQWFINGQKDEGLRPQHIQAGGDLFLATM--REVYTAYEQACER 186
           +++  GLD+++WPA+Q    I+G K++GL P  I  G     A    RE+Y AY+   + 
Sbjct: 173 LIQAEGLDDKRWPAKQFAGMIDGWKNKGLTPPDIPEGDSRAFANGKGRELYAAYQARLKT 232

Query: 187 AGVIDFSELLLRALDLWRDHPGLLEHYQRRFRHVLVDEFQDTNAVQYAWLRLLARGG--- 243
               DF +LLL  + ++R H  +L+ Y ++FR++LVDE+QDTN  QY WLRLLA+     
Sbjct: 233 LNACDFGDLLLHPISIFRRHTDILKEYHQKFRYILVDEYQDTNTAQYMWLRLLAQRAKDE 292

Query: 244 -DSLMAVGDDDQSIYGWRGAKIENIHQYTADFPDAEMIRLEQNYRSTGGILKAANALIAN 302
             ++  VGDDDQSIYGWRGA+++NI ++  DFP A++I+LE+NYRST  IL AA  LIA+
Sbjct: 293 PQNVCCVGDDDQSIYGWRGAEVDNILRFDKDFPGAKVIKLERNYRSTEHILGAAGHLIAH 352

Query: 303 NSGRLGKELWTDMG--EGEPLTLYAAYNEHDEARYVVETIESLVKQGNARNEIAILYRSN 360
           N GRLGK L+T+    + E + ++AA++  +EAR V E IE L ++    N++AIL R++
Sbjct: 353 NEGRLGKTLFTERSSPDDEKVVVHAAWDSEEEARAVGEEIEQLQRKNYKLNDMAILVRAS 412

Query: 361 AQSRVLEEALLRERIPYRIYGGQRFFERAEIKNAMAYLRLIEGRGNDAALERVINVPPRG 420
            Q R  E+  +   + YR+ GG RF+ER EI++AMAY RL+    +D A ER++N P RG
Sbjct: 413 FQMREFEDRFVTLGLNYRVIGGPRFYERLEIRDAMAYFRLVCQPADDLAFERIVNTPKRG 472

Query: 421 IGEKTVEAIREHARHSQLSMWEAMCQLIAAKALKGRAASALGAFIELIEGLAAKVVDMPL 480
           +G+ T+  + ++AR   + M  A   +I    LK +A  AL   ++        + +   
Sbjct: 473 LGDTTIRNLHDYARARDIPMLAAAADIIETDELKPKARKALFDVVQDFRRWQGLLENTEH 532

Query: 481 HTMTQTTIEQSGLITYHQEEKGEKGQARVENLEELVSAARNFESTDEDADLSPLSAFLGH 540
            T+ +  +++SG     Q +K  +   R+ENL+EL+ +  +FES         +  FL H
Sbjct: 533 TTLAEQILDESGYTAMWQADKTAEAPGRLENLKELIRSMESFES---------MRGFLEH 583

Query: 541 ASLEAGDTQADEHEDSIQLMTLHSAKGLEFPYVFLVGMEEGLFPHKMSLEEPGR--LEEE 598
            +L   D + +   D++ +MTLHSAKGLEF  VFL G EEGLFPH+ +L+E GR  LEEE
Sbjct: 584 VAL-VMDAEQNAELDAVSIMTLHSAKGLEFDTVFLPGWEEGLFPHQRALDEGGRSGLEEE 642

Query: 599 RRLAYVGITRAMRQLVMTYAETRRLYGSETYNKVSRFVREIPAGLVQEVRLSNSVSRPFG 658
           RRLAYVGITRA +   + +   RR++G       SRF+ E+P   V +V  S+S    +G
Sbjct: 643 RRLAYVGITRAKKLCHIWFVSNRRIHGLWQSTLPSRFLDELPPAHV-DVAASDSNYGGYG 701

Query: 659 G 659
           G
Sbjct: 702 G 702