Pairwise Alignments

Query, 728 a.a., DNA-dependent ATPase I and helicase II, nucleotide Excision Repair Complex from Pseudomonas putida KT2440

Subject, 679 a.a., ATP-dependent DNA helicase Rep from Acinetobacter radioresistens SK82

 Score =  408 bits (1049), Expect = e-118
 Identities = 254/647 (39%), Positives = 376/647 (58%), Gaps = 15/647 (2%)

Query: 11  NSLNDAQRQAVAATLGRQLVLAGAGSGKTRVLVHRIAWLIQVEQASPHSILSVTFTNKAA 70
           + LN+ Q +A+  T G  LVLAGAGSGKT V+  +IA+LIQ  +   H I ++TFTNKAA
Sbjct: 5   SQLNNKQLEAMKYTQGPLLVLAGAGSGKTSVITRKIAYLIQQCRIPAHRITAMTFTNKAA 64

Query: 71  AEMRQRIEQLLGINPA-GMWVGTFHGLAHRLLRAHWQEARLVQNFQILDSDDQQRLIKRV 129
            EM++R+ +LL      G+ V TFH     +LR   +   L  NF ILD+DD +R++  +
Sbjct: 65  REMKERVGKLLSREEIKGLSVSTFHTFGLNMLRLELKNTPLKNNFSILDADDCKRILMDL 124

Query: 130 MRELGLD--EQKWPARQAQWFINGQKDEGLRPQHIQAGGDLFL-ATMREVYTAYEQACER 186
           M    L   E K    +A   I+  K++ + P+   +  +      M  +Y  YE+    
Sbjct: 125 MHRDNLSGAESKELIAKAMKKISDWKNDLILPEQAHSTCETPEDVQMAHLYQLYERNLRA 184

Query: 187 AGVIDFSELLLRALDLWRDHPGLLEHYQRRFRHVLVDEFQDTNAVQYAWLRLLARGGDSL 246
              +DF +L++    L +++  + + +Q R R++LVDE+QDTN  QY  ++LL       
Sbjct: 185 YNAVDFDDLIVMPTRLLQENAEVRDKWQNRVRYLLVDEYQDTNTAQYILVKLLVGVMGQF 244

Query: 247 MAVGDDDQSIYGWRGAKIENIHQYTADFPDAEMIRLEQNYRSTGGILKAANALIANNSGR 306
            AVGDDDQSIY WRGAK EN+     DFP+ ++I+LEQNYRST  ILK+ANA+IANN   
Sbjct: 245 TAVGDDDQSIYAWRGAKPENMALLQQDFPNLKVIKLEQNYRSTSRILKSANAVIANNPHI 304

Query: 307 LGKELWTDMGEGEPLTLYAAYNEHDEARYVVETIESLVKQGNARN--EIAILYRSNAQSR 364
             K+LW+D G G+ + +    N+ DEA  VV+ I +  K  NAR+  + A+LYR N Q+R
Sbjct: 305 FDKQLWSDKGHGDVIRVITCRNDDDEAERVVKDILT-HKLMNARSWKDYAVLYRGNFQAR 363

Query: 365 VLEEALLRERIPYRIYGGQRFFERAEIKNAMAYLRLIEGRGNDAALERVINVPPRGIGEK 424
           VLE  L + +IPY++ GGQ FF RAEIK+ M+YLRLI    +D+A  R+IN P R IG  
Sbjct: 364 VLETQLRQMQIPYKLSGGQSFFARAEIKDVMSYLRLIINPEDDSAFLRIINTPKRAIGPV 423

Query: 425 TVEAIREHARHSQLSMWEAMCQLIAAKALKGRAASALGAFIELIEGLAAKVV--DMPLHT 482
           T+E +   A+ + LS+  A         +  +A + L  F + I     +++  D P+  
Sbjct: 424 TLEKLGLFAQDNHLSLLSAAGDQRLTMVIPKKAVTQLHEFADFIGNFTRELLDDDEPVPK 483

Query: 483 MTQTTIEQSGLITYHQEEKGEKGQ--ARVENLEELVSAARNFESTDEDADLSPLSAFLGH 540
           + Q  + ++G I Y +E+     Q  ++++N+E L S+ ++  +  ED D   + + +  
Sbjct: 484 IRQ-MMNEAGYIDYIREQAATPAQEKSKLDNIESLYSSIQSLINRAEDVDDKNIESVIRK 542

Query: 541 ASL--EAGDTQADEHEDSIQLMTLHSAKGLEFPYVFLVGMEEGLFPHKMSLEEPGRLEEE 598
             L       Q +E  D + L+TLH+AKGLEFPYV+++G+EE L PHK S+     +EEE
Sbjct: 543 MVLLDMLEQQQEEEDIDKVNLLTLHAAKGLEFPYVYMIGLEEELLPHKNSIASE-TIEEE 601

Query: 599 RRLAYVGITRAMRQLVMTYAETRRLYGSETYNKVSRFVREIPAGLVQ 645
           RRL YVGITRA + L +T AE R+  G       SRF+ E+P   V+
Sbjct: 602 RRLMYVGITRARQALTLTLAEQRKNGGQMKQMTPSRFLDELPQDEVE 648