Pairwise Alignments

Query, 509 a.a., Transcriptional regulator, GntR family from Pseudomonas putida KT2440

Subject, 475 a.a., DNA-binding protein from Pseudomonas simiae WCS417

 Score =  245 bits (626), Expect = 2e-69
 Identities = 154/468 (32%), Positives = 226/468 (48%), Gaps = 43/468 (9%)

Query: 25  QQLYQALRARVLDGRLSSGTRLPATRDLAAMLALSRNSVVRAYDQLYAEGFIESRVGDGT 84
           Q++Y+  R  +  G+L  G R+P+ R +A  L ++R +V  AY  L +EGF E+R   GT
Sbjct: 8   QEIYRRFRQAIDQGQLRPGERVPSVRAMAQELKVARGTVEAAYQLLVSEGFFEARGQAGT 67

Query: 85  YVSRLPKLSTQVSTGLSLGLSTGLSTFRQENTEDLSSGRHISAPLQRLKNNHLPPPRSGL 144
            ++                                      + P   +K      P +  
Sbjct: 68  VIAE-------------------------------------ALPQVPMKPMPAALPVTSG 90

Query: 145 PRAFRVGIPAFDLFPFDVWAKLQAGFWRNPSPAQLGYGDPAGEPALRDLIAAYLRRSRGL 204
           P   ++G+PA D FP  +WA+L     R      L  GD  G  ALR  IA+YL   RG+
Sbjct: 91  PLPLQMGLPALDAFPRKLWARLVTQQVRRTDANSLAMGDERGTQALRVAIASYLALYRGV 150

Query: 205 SCTAEQIVITSGAQQAISLCAQLLLQPGDGVAVENPGYRAAAHAFTLAGGRVCGVPVDED 264
            CT +Q+ + +G    ++L  + L   G     E+PGY  A       G  +  VPVD D
Sbjct: 151 ECTPQQVFVCAGYAGGLTLVCEALAMAGQRCWFEDPGYLHARQLLIHQGVELVPVPVDRD 210

Query: 265 GLDCGR-LEQLTDCRLTYVTPAHQYPTGVTMSLARRLALLAWAERSDGWIIEDDYDGEYR 323
           GLD  + + +  + RL  VTPAHQ P GV +S ARR ALLAWA     W++EDDYD E+R
Sbjct: 211 GLDVEQGISRGREARLAVVTPAHQSPLGVALSPARRRALLAWAREQGSWVVEDDYDSEFR 270

Query: 324 YSGAPLAPLAALDRHGRVLYVGTFGKIAFPALRLGYLVLPSKLVQAFSQGRAIAVRHSEV 383
           Y G PLA L   D   RV+Y G+F K+ FP LRLGYLV+P+ L+  F QG  +  + S  
Sbjct: 271 YRGQPLAALKRQDGDDRVIYAGSFSKMLFPGLRLGYLVVPTALLARFEQGARVLQQRSAQ 330

Query: 384 SSQCVMAEFMARGHFQRHIRRMRKAALKRRDVLKAGWPVDIPGLGAMPEVAAGLHVKVNV 443
             Q   A+F+ +GHF RH+++MR+   +RR  L     +       + E A G+++   +
Sbjct: 331 LLQLTAADFLEQGHFTRHLKKMRQLYAQRRGYLVEALRLHCGAFLRVDEQAGGINLLARL 390

Query: 444 DNFAREQELVAKAEAVEVEVTPLSNFWLADCEVPVDKRAGLVLGFAAV 491
                +  +   AE   + V  LS + L        +  G+++GF  V
Sbjct: 391 VVDVPDWAVAEAAERAGLGVKALSAWTLEG-----GQGQGVLMGFTNV 433