Pairwise Alignments

Query, 367 a.a., putrescine-binding periplasmic protein from Pseudomonas putida KT2440

Subject, 362 a.a., ABC transporter substrate-binding protein from Pseudomonas simiae WCS417

 Score =  394 bits (1013), Expect = e-114
 Identities = 194/364 (53%), Positives = 257/364 (70%), Gaps = 4/364 (1%)

Query: 2   VRLKRLLAPFIAATLFAGALHAQAEQRTLRVYNWFDYITPQTLTAFQKDSGVKLVYDIFD 61
           +RL + L P      F+ A  A     T+ VYNW DYI   TL  FQ  +G+K +YD+FD
Sbjct: 1   MRLVKQLFPLALVAAFSSASQAAP---TVSVYNWTDYIGETTLADFQAKTGIKPIYDVFD 57

Query: 62  TNEALEAKLLTGNSGYDVVVPSNVFLAKQIEAGVFQPLDRSKLPNWQHLDPALMKLIEAN 121
           +NE LE KLL G +GYDVVVPSN FLA+Q++AG F  LDR++LPN+++LDP L+KL+E N
Sbjct: 58  SNETLEGKLLAGRTGYDVVVPSNHFLARQVKAGAFLKLDRAQLPNFKNLDPKLLKLLEKN 117

Query: 122 DPGNKFAVPYMYGTVLIGFNPAKVKAALGDNAPVDSWDLIFKEENIAKLKQCGVALLDSP 181
           DPGN  +VPY++GT  IG+N  KVK  LG +A +DSW ++F+ ENI KL QCGVA LDS 
Sbjct: 118 DPGNAHSVPYLWGTNGIGYNVDKVKEVLGIDA-IDSWAVLFEPENIKKLNQCGVAFLDSA 176

Query: 182 SEILPLALQYLGLPPNSDKPADYKKAEELMLKIRPHITYFHSSKYMADIANGDICVAVGY 241
            E+ P  L Y+G  P S+ P DYK+AE  +L +RP+ITYFHSSKY++D+ANG+ICVA GY
Sbjct: 177 DELFPAILNYMGKDPRSENPEDYKQAEAKLLTLRPYITYFHSSKYISDLANGNICVAFGY 236

Query: 242 SGSFSQAANRAREANNGVVVDMRLPKEGAPIWFDMLAIPKGAANPEDAHTFINYLLRPEV 301
           SG   QAANRA+EA NGV +   +PKEG+ +WFD+LAIP  A++P++AH FINYLL P+V
Sbjct: 237 SGDVFQAANRAKEAKNGVKIAYSIPKEGSNLWFDLLAIPADASHPKEAHAFINYLLDPQV 296

Query: 302 IAPISDFVGYPNPNKDATDKVNPTIRNNPNLYPTAEAMAKLYTLKPLTRNAERARTRAWT 361
           IA +S  VGY N N  A   ++P + NNP +YP+ + + KLY     T    R  TRAW+
Sbjct: 297 IAKVSASVGYANANPAAKAFMDPELVNNPEVYPSQDVLDKLYISTTPTPATMRLMTRAWS 356

Query: 362 RIKS 365
           ++K+
Sbjct: 357 KVKT 360