Pairwise Alignments

Query, 367 a.a., putrescine-binding periplasmic protein from Pseudomonas putida KT2440

Subject, 348 a.a., spermidine/putrescine ABC transporter substrate-binding protein PotD from Escherichia coli ECRC62

 Score =  196 bits (499), Expect = 6e-55
 Identities = 119/340 (35%), Positives = 182/340 (53%), Gaps = 20/340 (5%)

Query: 1   MVRLKRLLAPFIAATLFAGALHAQAEQRTLRVYNWFDYITPQTLTAFQKDSGVKLVYDIF 60
           M +  R L    A  L   A HA  +  TL  YNW +Y+ P  L  F K++G+K++Y  +
Sbjct: 1   MKKWSRHLLAAGALALGMSAAHAD-DNNTLYFYNWTEYVPPGLLEQFTKETGIKVIYSTY 59

Query: 61  DTNEALEAKLLTGNSG-YDVVVPSNVFLAKQIEAGVFQPLDRSKLPNWQHLDPALMKLIE 119
           ++NE + AKL T   G YD+VVPS  ++ K  + G+ Q +D+SKL N+ +LDP ++   +
Sbjct: 60  ESNETMYAKLKTYKDGAYDLVVPSTYYVDKMRKEGMIQKIDKSKLTNFSNLDPDMLN--K 117

Query: 120 ANDPGNKFAVPYMYGTVLIGFNPAKVKAALGDNAPVDSWDLIFKEENIAKLKQCGVALLD 179
             DP N +++PY++G   IG N   V     D   V SW  ++K E    L      L D
Sbjct: 118 PFDPNNDYSIPYIWGATAIGVNGDAV-----DPKSVTSWADLWKPEYKGSL-----LLTD 167

Query: 180 SPSEILPLALQYLGLPPNSDKPADYKKAEELMLKIRPHITYFHSSKYMADIANGDICVAV 239
              E+  +AL+ LG   N+  P + + A   + K+ P++  F+S         G++ + +
Sbjct: 168 DAREVFQMALRKLGYSGNTTDPKEIEAAYNELKKLMPNVAAFNSDNPANPYMEGEVNLGM 227

Query: 240 GYSGSFSQAANRAREANNGVVVDMRLPKEGAPIWFDMLAIPKGAANPEDAHTFINYLLRP 299
            ++GS    A  AR+A  G  +D+  PKEG   W D LAIP  A N E A   IN+LLRP
Sbjct: 228 IWNGS----AFVARQA--GTPIDVVWPKEGGIFWMDSLAIPANAKNKEGALKLINFLLRP 281

Query: 300 EVIAPISDFVGYPNPNKDATDKVNPTIRNNPNLYPTAEAM 339
           +V   +++ +GYP PN  A   ++P + N+  LYP AE +
Sbjct: 282 DVAKQVAETIGYPTPNLAARKLLSPEVANDKTLYPDAETI 321