Pairwise Alignments

Query, 692 a.a., junction-specific ATP-dependent DNA helicase from Pseudomonas putida KT2440

Subject, 1149 a.a., transcription-repair coupling factor from Pseudomonas simiae WCS417

 Score =  236 bits (602), Expect = 5e-66
 Identities = 159/443 (35%), Positives = 238/443 (53%), Gaps = 38/443 (8%)

Query: 223 HRLAFEELLTHQLSQQRLRESLRSLRAPVLPRATRLQAQ--------------YLANLGF 268
           HRL  E   T Q ++++  E +R + A +L    R  A+              + A   F
Sbjct: 545 HRLGSE---TWQKAKRKAAEQVRDVAAELLDIYARRAAREGYAFADPKADYATFSAGFAF 601

Query: 269 QPTGAQQRVANEIAYDLSQHEPMMRLVQGDVGAGKTVVAALAALQALEAGYQVALMAPTE 328
           + T  QQ     +  D+   +PM RLV GDVG GKT VA  AA  A+  G QVA++ PT 
Sbjct: 602 EETPDQQTTIEAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGKQVAILVPTT 661

Query: 329 ILAEQHYITFKRWLEPLGIEVAWLAGKLKGKARAASLEQIANGA-PMVVGTHALFQEEVR 387
           +LA+QHY +F+       + V  ++     K   A++  +A G   +V+GTH L  ++V+
Sbjct: 662 LLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVNAAIADLAEGKIDIVIGTHKLLSDDVK 721

Query: 388 FKHLALAIIDEQHRFGVQQRLALRRKGVAGELCPHQLIMTATPIPRTLAMSAYADLDTSV 447
            K+L L IIDE+HRFGV+Q+  L  K +  E+    L +TATPIPRTL M+     D S+
Sbjct: 722 IKNLGLVIIDEEHRFGVRQKEQL--KALRSEV--DILTLTATPIPRTLNMAVSGMRDLSI 777

Query: 448 LDELPPGRTPVNTVLVADSRRFEVVERVRAACAEGRQAYWVCTLIEESEELTCQAAESTY 507
           +   P  R  V T  V +  +  V E +      G Q Y++   ++  E+     AE   
Sbjct: 778 IATPPARRLSVRT-FVMEQNKSTVKEALLRELLRGGQVYYLHNDVKTIEKCAADLAE--- 833

Query: 508 EELGSALGELKVGLIHGRMKPAEKAEIMAEFKAGNLQLLVATTVIEVGVDVPNASLMIIE 567
                 + E ++ + HG+M+  E  ++M++F      +L+A+T+IE G+DVP+A+ +IIE
Sbjct: 834 -----LVPEARIAIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIIIE 888

Query: 568 NPERLGLAQLHQLRGRVGRGSAVSHCVLLYHPPLSQI---GRERLGIMRETND---GFII 621
             ++ GLAQLHQLRGRVGR    ++  LL  PP  QI     +RL  +  T D   GF++
Sbjct: 889 RADKFGLAQLHQLRGRVGRSHHQAYAYLL-TPPRQQITSDAEKRLEAIANTQDLGAGFVL 947

Query: 622 AEKDLELRGPGEMLGTRQTGLLQ 644
           A  DLE+RG GE+LG  Q+G +Q
Sbjct: 948 ATNDLEIRGAGELLGDGQSGQIQ 970