Pairwise Alignments

Query, 692 a.a., junction-specific ATP-dependent DNA helicase from Pseudomonas putida KT2440

Subject, 1158 a.a., Transcription-repair coupling factor from Sphingobium sp. HT1-2

 Score =  204 bits (519), Expect = 2e-56
 Identities = 161/497 (32%), Positives = 249/497 (50%), Gaps = 44/497 (8%)

Query: 211  LDELAEGQHWAQHRLAFEELLTHQLSQQRLRESLRSLRAPVL--PRATRLQAQYLANLGF 268
            LD+L  G+ W + +   +E +     +     + R+LR   +  P A    A ++    +
Sbjct: 553  LDKLG-GEAWQRRKARMKERIREIAGELLKTAAERALRPAEIAEPDAAGYPA-FVDRFPY 610

Query: 269  QPTGAQQRVANEIAYDLSQHEPMMRLVQGDVGAGKTVVAALAALQALEAGYQVALMAPTE 328
            Q T  Q R   ++  DL    PM RLV GDVG GKT VA  AA  A  AG QV ++ PT 
Sbjct: 611  QETDDQDRAIGDVIEDLGAGRPMDRLVCGDVGFGKTEVALRAAFVAAMAGMQVVVICPTT 670

Query: 329  ILAEQHYITFKRWLEPLGIEVAWLAGKLKGKARAASLEQIANGA-PMVVGTHALFQEEVR 387
            +LA QH++ F        +E+A L+  +  K   A+   +A+G   +VVGTHAL  + + 
Sbjct: 671  LLARQHHMNFVERFRGFPLEIARLSRLVPDKEAKATKAGLADGTIDIVVGTHALLAKGLE 730

Query: 388  FKHLALAIIDEQHRFGV--QQRLALRRKGVAGELCPHQLIMTATPIPRTLAMSAYADLDT 445
            FK L L I+DE+ RFGV  ++RL   +  V      H L +TATPIPRTL M+     + 
Sbjct: 731  FKRLGLVIVDEEQRFGVTHKERLKSLKTDV------HVLTLTATPIPRTLQMAMSGLREL 784

Query: 446  SVLDELPPGRTPVNTVLVADSRRFEVVERVRAACAEGRQAYWVCTLIEESEELTCQAAES 505
            SV+   P  R  V T ++       + E +      G Q+++V   I +  E+       
Sbjct: 785  SVIQTPPVDRLAVRTYIMPWD-GVVIREALLREHYRGGQSFFVVPRISDLTEVE------ 837

Query: 506  TYEELGSALGELKVGLIHGRMKPAEKAEIMAEFKAGNLQLLVATTVIEVGVDVPNASLMI 565
              E L + + E+K  + HG+M   +  E M+ F      +L++TT++E G+D+P+A+ +I
Sbjct: 838  --EFLRTEVPEVKPIVAHGQMSATDVEERMSAFYDKRYDVLLSTTIVESGLDIPSANTLI 895

Query: 566  IENPERLGLAQLHQLRGRVGRGS--AVSHCVLLYHPPLSQIGRERLGIMRETND---GFI 620
            I   +R GLAQL+QLRGRVGR    A ++     +  +++   +RL ++ + +    GF 
Sbjct: 896  IHRADRFGLAQLYQLRGRVGRSKTRAYAYFTTPANRIITETAEKRLKVLSDLDTLGAGFQ 955

Query: 621  IAEKDLELRGPGEMLGTRQTG--------LLQFKVADLMRDADL----LPAVRDAAQALV 668
            +A  DL++RG G ++G  Q+G        L Q  + D + DA      L A RD+    +
Sbjct: 956  LASHDLDIRGAGNLVGDEQSGHIKEVGFELYQSMLEDAIMDAKAGGAGLEARRDSFSPQI 1015

Query: 669  S-----RWPEHVSPLLD 680
            S       PE   P LD
Sbjct: 1016 SVDAPIMIPEEFVPDLD 1032