Pairwise Alignments

Query, 692 a.a., junction-specific ATP-dependent DNA helicase from Pseudomonas putida KT2440

Subject, 1160 a.a., Transcription-repair coupling factor from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  226 bits (577), Expect = 4e-63
 Identities = 169/489 (34%), Positives = 252/489 (51%), Gaps = 31/489 (6%)

Query: 200  RYLHNPPADADLDELAEGQHWAQHRLAFEELLTHQLSQQRLRESLRSLRAPVLPRATRLQ 259
            RY      +A L +L  GQ     R A E++     + + L  ++ + RA     A R  
Sbjct: 540  RYTGVSADEAPLHKLGSGQWDKAKRKAAEQV--RDAAAELL--NIYARRAARQGHAFRYS 595

Query: 260  AQ----YLANLGFQPTGAQQRVANEIAYDLSQHEPMMRLVQGDVGAGKTVVAALAALQAL 315
            AQ    +  + GF+ T  Q+   + +  D+    PM RLV GDVG GKT VA  AA  A+
Sbjct: 596  AQDYEVFANDFGFEETADQRGAIHAVIQDMISPRPMDRLVCGDVGFGKTEVALRAAFVAV 655

Query: 316  EAGYQVALMAPTEILAEQHYITFKRWLEPLGIEVAWLAGKLKGKARAASLEQIANGA-PM 374
              G QVA +APT +LAEQH+ T         ++VA ++     K   A+ + +A+G+  +
Sbjct: 656  TGGRQVAFLAPTTLLAEQHFQTLSDRFSKWPVKVAEMSRFRSAKEITAAAKGLADGSVDI 715

Query: 375  VVGTHALFQEEVRFKHLALAIIDEQHRFGVQQRLALRRKGVAGELCPHQLIMTATPIPRT 434
            VVGTH L  E V+FK L L IIDE+HRFGV+ + A+  K +  E+    L +TATPIPRT
Sbjct: 716  VVGTHKLLSESVKFKDLGLLIIDEEHRFGVRHKEAM--KALRAEV--DVLTLTATPIPRT 771

Query: 435  LAMSAYADLDTSVLDELPPGRTPVNTVLVADSRRFEVVERVRAACAEGRQAYWVCTLIEE 494
            L M+     D SV+   P  R  + T  V +     + E V      G Q Y++   +E 
Sbjct: 772  LGMALEGLRDLSVIATAPQRRLAIKT-FVRNEGNGVIREAVLRELKRGGQVYFLHNEVE- 829

Query: 495  SEELTCQAAESTYEELGSALGELKVGLIHGRMKPAEKAEIMAEFKAGNLQLLVATTVIEV 554
                     E+  ++L   L E ++ + HG+M   E   +M +F A    +L+ +T+IE 
Sbjct: 830  -------TIENRRQKLEEILPEARIAIAHGQMPERELERVMRDFVAQRFNVLLCSTIIET 882

Query: 555  GVDVPNASLMIIENPERLGLAQLHQLRGRVGRGSAVSHCVLLYH--PPLSQIGRERLGI- 611
            G+DVP A+ +++   ++ GLAQLHQLRGRVGR    ++  L+      L++   +RL   
Sbjct: 883  GIDVPTANTIVMSRADKFGLAQLHQLRGRVGRSHHQAYAYLMVPDIEGLTKHAAQRLDAI 942

Query: 612  --MRETNDGFIIAEKDLELRGPGEMLGTRQTGLLQFKVADLMRDADLLPAVRDAAQALVS 669
              M E   GF +A  DLE+RG GE+LG  Q+G +  +V   + +  L  AV   +     
Sbjct: 943  QQMEELGSGFYLAMHDLEIRGAGEVLGEHQSGNM-LEVGFQLYNEMLSEAV---SSLKAG 998

Query: 670  RWPEHVSPL 678
            R P+ +SPL
Sbjct: 999  REPDLLSPL 1007