Pairwise Alignments

Query, 692 a.a., junction-specific ATP-dependent DNA helicase from Pseudomonas putida KT2440

Subject, 1116 a.a., transcription-repair coupling factor (mfd) from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  215 bits (548), Expect = 8e-60
 Identities = 139/392 (35%), Positives = 211/392 (53%), Gaps = 19/392 (4%)

Query: 258 LQAQYLANLGFQPTGAQQRVANEIAYDLSQHEPMMRLVQGDVGAGKTVVAALAALQALEA 317
           LQ +  ++  F+ T  Q     ++  D+ +  PM RLV GDVG GKT VA  AA +A+  
Sbjct: 549 LQVELESSFIFEDTPDQAVATGDVKADMEKPYPMDRLVCGDVGFGKTEVAIRAAFKAIND 608

Query: 318 GYQVALMAPTEILAEQHYITFKRWLEPLGIEVAWLAGKLKGKARAASLEQIANGA-PMVV 376
             QVA++ PT ILA QHY TFK  LE   ++V ++      K      +Q+ +G   ++V
Sbjct: 609 RKQVAVLVPTTILAMQHYRTFKERLEGFPVKVDYINRFRTTKQVKEITKQVTSGEIDILV 668

Query: 377 GTHALFQEEVRFKHLALAIIDEQHRFGVQQRLALRRKGVAGELCPHQLIMTATPIPRTLA 436
           GTH +  ++V+FK L L IIDE+ +FGV+ +  L+   V  ++    L +TATPIPRTL 
Sbjct: 669 GTHRIVNKDVQFKDLGLLIIDEEQKFGVKVKDQLKELRVNVDV----LTLTATPIPRTLH 724

Query: 437 MSAYADLDTSVLDELPPGRTPVNTVLVADSRRFEVVERVRAACAEGRQAYWVCTLIEESE 496
            S     D SV+   PP R PV T +        + + V      G Q ++V   + E +
Sbjct: 725 FSLMGARDLSVIATPPPNRQPVTTEIHTFEEEV-IRDAVSRELQRGGQVFFVHNRVGEID 783

Query: 497 ELTCQAAESTYEELGSALGELKVGLIHGRMKPAEKAEIMAEFKAGNLQLLVATTVIEVGV 556
            +           +   + + K+   HG+M   +  +IM +F  G   +LV+T +IE G+
Sbjct: 784 SIA--------NLIMRLVPDAKIAGAHGQMDGKQLEKIMVKFIEGEFDVLVSTNIIESGL 835

Query: 557 DVPNASLMIIENPERLGLAQLHQLRGRVGRGSAVSHCVLLYHP--PLSQIGRERLGIMRE 614
           D+PNA+ +II      GL+ LHQ+RGRVGR +  ++C LL  P   L+   R+RL  + E
Sbjct: 836 DIPNANTIIINRAHMFGLSDLHQMRGRVGRSNKKAYCYLLTSPMSGLTAEARKRLQTLEE 895

Query: 615 ---TNDGFIIAEKDLELRGPGEMLGTRQTGLL 643
                DGF +A +DL++RG G +LG  Q+G +
Sbjct: 896 FSDLGDGFKVAMRDLDIRGAGNLLGAEQSGFI 927