Pairwise Alignments

Query, 529 a.a., periplasmic dipeptide transport protein from Pseudomonas putida KT2440

Subject, 533 a.a., peptide ABC transporter substrate-binding protein from Pseudomonas simiae WCS417

 Score =  464 bits (1194), Expect = e-135
 Identities = 238/513 (46%), Positives = 329/513 (64%), Gaps = 2/513 (0%)

Query: 18  AAQAAPLSVCSEASPEGFDVVQYNSLTTTNATADVLMNRLVEFDAAQGKVVPSLATSWTV 77
           A  A+ L  CSEASP GFD  QY S T  +A+A+ + NRL +F     +V P LATSW +
Sbjct: 22  AQAASTLVYCSEASPAGFDPSQYTSGTDFDASAETVFNRLTQFKRGGTEVEPGLATSWDI 81

Query: 78  SADGLVYDFTLRDDVKFHSTSYFKPSRKLNADDVLFSFQRMLYPAHAWHKTAPGGYPHAQ 137
           S DGL Y F LRD VKFH+T +F P+R  NADDVLF+F R+L     + +  P   P+  
Sbjct: 82  SQDGLTYTFHLRDGVKFHTTDFFSPTRDFNADDVLFTFNRLLDAQSPFRQAYPSESPYFT 141

Query: 138 SLQLGSLIKAIEAPSPNTVRFTLSHPDATFLATLSMGFASIYSAEYADKLLKAGTPEKLN 197
            + L + IK+++    +TVRF L++ DA+F+  L+M FAS+ SAEYA +LLK G  E++N
Sbjct: 142 DMGLNTTIKSVDKLDDHTVRFNLNNVDASFVQNLAMSFASVQSAEYAAQLLKQGKAEEIN 201

Query: 198 NQPIGTGPFVFQRFQKDAVVRYRANPDYFAGKPA-VDPLIFAITTDANVRLQKLKRGECQ 256
            +P+GTGPFVF+R+QKD+ +RY AN  Y+  +   +D L+FAIT DA  RLQKLK GECQ
Sbjct: 202 QKPVGTGPFVFKRYQKDSQIRYVANKQYWKPEDVKLDNLVFAITPDAASRLQKLKAGECQ 261

Query: 257 VALSPKPLDIAEAGQDGNLKVATTPAFMTAFVAINSQHPPLDKPEVRQAINLAFDRQAYL 316
           V+  P+P DI    QD NL V     F   F+A N  HPPLD+ +VRQA+++A D+ A +
Sbjct: 262 VSGYPRPADIEVMKQDPNLHVLQQAGFNLGFLAYNVTHPPLDQLKVRQALDMAIDKPAII 321

Query: 317 KAVFEDSAVAANGPYPPNTWSYAKDLPGYPLDLKKAKALLAKAGLAEGFSTTIWTRPSGS 376
           KAV++ +   A    PP  WSY   +   P D  KAKALL +AG+A G +  +W      
Sbjct: 322 KAVYQSAGQLAQNALPPAQWSYDPTIKDAPYDPTKAKALLKEAGVAPGTTVNLWAMTVQR 381

Query: 377 LLNPNPSLGAQMLQADLAKIGIKAEIRVIEWGELIRRAKAGEHDLLFMGWAGDNGDPDNF 436
             NPN  + AQM+Q D  K+GIKA I   EWGE I+RAK GEHD +  GW GDNGDPDN+
Sbjct: 382 ASNPNARMSAQMIQQDWEKVGIKANIVSYEWGEYIKRAKNGEHDAMIYGWTGDNGDPDNW 441

Query: 437 LSPQFSCAAVESGTNFARFCDSRLDQLISAGRTTNDQSVRSRLYQQAQTLIQQQALWVPL 496
           L   +SCAAV+ G+N+A++C+   D+L+   + +ND+  R + YQQAQ ++++Q    P+
Sbjct: 442 LGVLYSCAAVK-GSNYAKWCNPAYDKLVQQAKVSNDREQRIKWYQQAQKILKEQVPITPI 500

Query: 497 AHPTAATLLRQGVEGYQVSPFGRLDFSKVTVTK 529
           A+ T    LR+ V+ +++SPFG   F  V++ K
Sbjct: 501 ANSTVFQPLRKEVKDFKISPFGLTPFYGVSLDK 533