Pairwise Alignments

Query, 529 a.a., periplasmic dipeptide transport protein from Pseudomonas putida KT2440

Subject, 542 a.a., peptide ABC transporter substrate-binding protein from Pseudomonas simiae WCS417

 Score =  441 bits (1133), Expect = e-128
 Identities = 230/524 (43%), Positives = 324/524 (61%), Gaps = 11/524 (2%)

Query: 15  AAGAAQAAP-LSVCSEASPEGFDVVQYNSLTTTNATADVLMNRLVEFDAAQGKVVPSLAT 73
           AA  AQAA  L  CSE SP GFD  QY + T  +A+A+ + NRL +F+     V+P LAT
Sbjct: 18  AAPFAQAATNLVFCSEGSPAGFDPGQYTTGTDFDASAETMFNRLTQFERGGTAVIPGLAT 77

Query: 74  SWTVSADGLVYDFTLRDDVKFHSTSYFKPSRKLNADDVLFSFQRMLYPAHAWHKTAPGGY 133
           SW VS DGL Y F LRD VKFH+TSYFKP+R  NADDVLF+F RM+     + K  P  +
Sbjct: 78  SWDVSPDGLTYTFHLRDGVKFHTTSYFKPTRTFNADDVLFTFNRMINKDDPFRKAYPTEF 137

Query: 134 PHAQSLQLGSLIKAIEAPSPNTVRFTLSHPDATFLATLSMGFASIYSAEYADKLLKAGTP 193
           P+   + + + IK IE    +TV+FTL   DA F+  L+M FASI SAEYA +LLK G P
Sbjct: 138 PYFTDMGMDTNIKNIEKVDEHTVKFTLGTVDAAFIQNLAMSFASIQSAEYAAQLLKEGKP 197

Query: 194 EKLNNQPIGTGPFVFQRFQKDAVVRYRANPDYFAGKPA-VDPLIFAITTDANVRLQKLKR 252
             +N +PIGTGPFVF+ +QKD+ +RY  N DY+  +   +D LIFAITTD +VR+QKLK+
Sbjct: 198 ADINQKPIGTGPFVFKSYQKDSNIRYTGNKDYWKPEDVKIDNLIFAITTDPSVRIQKLKK 257

Query: 253 GECQVALSPKPLDIAEAGQDGNLKVATTPAFMTAFVAIN--------SQHPPLDKPEVRQ 304
            ECQ+ L P+P D+   G D +LK+     F   ++A N         Q  PL    VRQ
Sbjct: 258 NECQITLFPRPADLKALGDDKDLKLPHQAGFNLGYIAYNVMDKVKGSDQPNPLADLRVRQ 317

Query: 305 AINLAFDRQAYLKAVFEDSAVAANGPYPPNTWSYAKDLPGYPLDLKKAKALLAKAGLAEG 364
           A++++ ++Q  + +V++ +   A    PP  WSY   +     D +KAK+LL +AG+ EG
Sbjct: 318 ALDMSVNKQQIIDSVYQGAGQLAVNAMPPTQWSYDTTIKDAKYDPEKAKSLLKEAGIKEG 377

Query: 365 FSTTIWTRPSGSLLNPNPSLGAQMLQADLAKIGIKAEIRVIEWGELIRRAKAGEHDLLFM 424
               +W  P     NPN  L A+MLQ D  KIG+  +I   EWGE I+R+K GE+  + +
Sbjct: 378 TEIVLWAMPVQRPYNPNAKLMAEMLQNDWKKIGLNVKITSYEWGEYIKRSKGGENQAMII 437

Query: 425 GWAGDNGDPDNFLSPQFSCAAVESGTNFARFCDSRLDQLISAGRTTNDQSVRSRLYQQAQ 484
           GW+GDNGDPDN+L+  F C ++ SG NF+++CD + D ++   + T+D + R+ LY+QAQ
Sbjct: 438 GWSGDNGDPDNWLNVLFGCDSL-SGNNFSKWCDKKFDGIVKEAKATSDVAKRTELYKQAQ 496

Query: 485 TLIQQQALWVPLAHPTAATLLRQGVEGYQVSPFGRLDFSKVTVT 528
            +++      P+AH T    +R  V+ +++SPFG   F  V+V+
Sbjct: 497 HILKDAVPMTPIAHSTVYQPMRSTVQDFKISPFGLNSFYGVSVS 540