Pairwise Alignments

Query, 529 a.a., periplasmic dipeptide transport protein from Pseudomonas putida KT2440

Subject, 534 a.a., peptide ABC transporter substrate-binding protein from Pseudomonas simiae WCS417

 Score =  481 bits (1238), Expect = e-140
 Identities = 252/529 (47%), Positives = 333/529 (62%), Gaps = 8/529 (1%)

Query: 6   LSLLFTTLFAA-----GAAQAAPLSVCSEASPEGFDVVQYNSLTTTNATADVLMNRLVEF 60
           LS +F T   A      AA    L  CSE SP GFD  QY + T  +A A+ L NRLVEF
Sbjct: 7   LSAMFATSLLAVATMGHAADKRSLVFCSEGSPAGFDTAQYTTATDNDA-AEPLYNRLVEF 65

Query: 61  DAAQGKVVPSLATSWTVSADGLVYDFTLRDDVKFHSTSYFKPSRKLNADDVLFSFQRMLY 120
           +  +  VVP+LAT W +S DG+ Y F LR+ VKFHS   FKP+R  NADDVLF+F RML 
Sbjct: 66  EKGETGVVPALATKWDISPDGMTYTFHLREGVKFHSNKEFKPTRDFNADDVLFTFNRMLD 125

Query: 121 PAHAWHKTAPGGYPHAQSLQLGSLIKAIEAPSPNTVRFTLSHPDATFLATLSMGFASIYS 180
           P H + K  P  +P+   + L   I  +E   P+TV  TL+  DA F+  ++M FA+I S
Sbjct: 126 PDHPFRKAYPTEFPYFNGMSLNKNIAKVEKTDPHTVVMTLNTVDAAFIQNIAMSFAAILS 185

Query: 181 AEYADKLLKAGTPEKLNNQPIGTGPFVFQRFQKDAVVRYRANPDYF-AGKPAVDPLIFAI 239
           AEYA++LLKAG P  +N +PIGTGPFVFQR+QKD+ +RY AN  Y+   +  +D LIFAI
Sbjct: 186 AEYAEQLLKAGKPSDINQKPIGTGPFVFQRYQKDSQIRYVANKQYWDPSRVKLDQLIFAI 245

Query: 240 TTDANVRLQKLKRGECQVALSPKPLDIAEAGQDGNLKVATTPAFMTAFVAINSQHPPLDK 299
            TDA+VR+QKLK GECQV L P+P D+     D NLK+ T P F   ++A N +H P D+
Sbjct: 246 NTDASVRVQKLKAGECQVTLHPRPADVDALKADPNLKLLTKPGFNLGYIAYNVRHKPFDQ 305

Query: 300 PEVRQAINLAFDRQAYLKAVFEDSAVAANGPYPPNTWSYAKDLPGYPLDLKKAKALLAKA 359
            EVRQA+++A ++Q+ L AV++ +   A    PP  WSY   +     + +KAK LL  A
Sbjct: 306 LEVRQALDMAVNKQSILNAVYQGAGQLAVNAMPPTQWSYDDSIKDAAYNPEKAKELLKAA 365

Query: 360 GLAEGFSTTIWTRPSGSLLNPNPSLGAQMLQADLAKIGIKAEIRVIEWGELIRRAKAGEH 419
           G+ EG   T+W  P     NPN  L A+MLQ+D AKIG+K +I   EWGE I+R K GEH
Sbjct: 366 GVKEGTEITLWAMPVQRPYNPNAKLMAEMLQSDWAKIGLKVKIVSYEWGEYIKRTKNGEH 425

Query: 420 DLLFMGWAGDNGDPDNFLSPQFSCAAVESGTNFARFCDSRLDQLISAGRTTNDQSVRSRL 479
           D+  +GW GDNGDPDN+L   +SC A+  G N++ +CD   D+LI   +   D+  R+ L
Sbjct: 426 DVSLIGWTGDNGDPDNWLGTLYSCDAI-GGNNYSMWCDPAYDKLIKQAKVVTDREQRTVL 484

Query: 480 YQQAQTLIQQQALWVPLAHPTAATLLRQGVEGYQVSPFGRLDFSKVTVT 528
           Y+QAQ L++QQ    P+AH T    L   VEG++VSPFGR  FS V++T
Sbjct: 485 YKQAQQLLKQQVPITPVAHSTVNQPLSAKVEGFKVSPFGRNVFSGVSIT 533