Pairwise Alignments

Query, 529 a.a., periplasmic dipeptide transport protein from Pseudomonas putida KT2440

Subject, 532 a.a., peptide ABC transporter substrate-binding protein from Pseudomonas simiae WCS417

 Score =  543 bits (1400), Expect = e-159
 Identities = 270/517 (52%), Positives = 353/517 (68%), Gaps = 2/517 (0%)

Query: 13  LFAAGAAQAAPLSVCSEASPEGFDVVQYNSLTTTNATADVLMNRLVEFDAAQGKVVPSLA 72
           L  A    A PL VC+EASPEGFD V Y +  T +A A+ + NRLV+F     +VVP+LA
Sbjct: 15  LSVAIGVSAKPLVVCTEASPEGFDPVLYTTAVTADAAAETMFNRLVDFKPGTTEVVPALA 74

Query: 73  TSWT-VSADGLVYDFTLRDDVKFHSTSYFKPSRKLNADDVLFSFQRMLYPAHAWHKTAPG 131
                +SADGL Y F LRDD+KFH+T YFKP+R +NADDVL+SFQR L P H WHK +  
Sbjct: 75  KDLPEISADGLTYTFHLRDDIKFHTTDYFKPTRNMNADDVLWSFQRQLDPNHPWHKKSLV 134

Query: 132 GYPHAQSLQLGSLIKAIEAPSPNTVRFTLSHPDATFLATLSMGFASIYSAEYADKLLKAG 191
           GYP+ +S+    L+K++E    +TV FTL+ P+A FLA L M F+SI+S EYAD+LLK+G
Sbjct: 135 GYPYFESMGFKELLKSVEKTDDHTVVFTLTRPEAPFLADLGMAFSSIHSKEYADQLLKSG 194

Query: 192 TPEKLNNQPIGTGPFVFQRFQKDAVVRYRANPDYFAGKPAVDPLIFAITTDANVRLQKLK 251
             E LN +PIGTGPFVF R+QKDA  R++ANPDYF GKPAVDPLI AI+TD NVRLQKLK
Sbjct: 195 KTEDLNAKPIGTGPFVFTRYQKDAQARFKANPDYFRGKPAVDPLILAISTDNNVRLQKLK 254

Query: 252 RGECQVALSPKPLDIAEAGQDGNLKVATTPAFMTAFVAINSQHPPLDKPEVRQAINLAFD 311
             ECQ+AL PKP DI    +D NLKV    A  T++ A+N+ H  +    VR AIN+AFD
Sbjct: 255 ANECQIALFPKPDDIPSIKKDPNLKVDELAAMTTSYTALNTTHKYMSDARVRHAINIAFD 314

Query: 312 RQAYLKAVF-EDSAVAANGPYPPNTWSYAKDLPGYPLDLKKAKALLAKAGLAEGFSTTIW 370
           +  Y +A+F + +AV   GPYPP    + + L   P DL KA+ALL +AG+ EG   T++
Sbjct: 315 KAGYTEALFGKGNAVVGTGPYPPTLLGFNEKLKNPPRDLDKARALLKEAGVPEGTEFTLF 374

Query: 371 TRPSGSLLNPNPSLGAQMLQADLAKIGIKAEIRVIEWGELIRRAKAGEHDLLFMGWAGDN 430
           TR  G   NPNP LGAQ +QADLA+IG+K  I+V+EWGE+++RAK GEHD++  GW GDN
Sbjct: 375 TRNGGGPTNPNPMLGAQRMQADLAQIGLKVNIKVMEWGEMLKRAKNGEHDMVSAGWVGDN 434

Query: 431 GDPDNFLSPQFSCAAVESGTNFARFCDSRLDQLISAGRTTNDQSVRSRLYQQAQTLIQQQ 490
           GDPDNFL+P  SC A ++G N+AR+C+     LI   R   + + R+ LY+QAQ +  + 
Sbjct: 435 GDPDNFLTPNLSCDAAKNGENYARWCNKEFQDLIDKARAIAEPAQRAALYEQAQDVFDKD 494

Query: 491 ALWVPLAHPTAATLLRQGVEGYQVSPFGRLDFSKVTV 527
             W+P+A+P   T +R+ VEG+  SP G  +F+   V
Sbjct: 495 QPWLPMAYPKLFTAMRKNVEGFTQSPLGTNNFATTQV 531