Pairwise Alignments

Query, 529 a.a., periplasmic dipeptide transport protein from Pseudomonas putida KT2440

Subject, 543 a.a., Dipeptide ABC transporter, substrate-binding protein DppA (TC 3.A.1.5.2) from Variovorax sp. SCN45

 Score =  423 bits (1087), Expect = e-123
 Identities = 226/537 (42%), Positives = 319/537 (59%), Gaps = 15/537 (2%)

Query: 2   RVAALSLLFTTLFAA-----GAAQAAPLSVCSEASPEGFDVVQYNSLTTTNATADV---L 53
           R  +L+LL  T  AA     GA  A  L  CSE SPE F    Y  + TT  + DV   +
Sbjct: 10  RSRSLALLAPTAIAALTLACGAVSAKTLVYCSEGSPENF----YPGMNTTGTSFDVTTQV 65

Query: 54  MNRLVEFDAAQGKVVPSLATSWTVSADGLVYDFTLRDDVKFHSTSY-FKPSRKLNADDVL 112
            N +VEF+    KVVP LA  W +SADG VY F LR  VK+H+TS  FKP+R  NADD +
Sbjct: 66  YNTIVEFERGGTKVVPGLAEKWDISADGTVYTFHLRKGVKWHTTSKSFKPTRDFNADDFI 125

Query: 113 FSFQRMLYPAHAWHKTAPGGYPHAQSLQLGSLIKAIEAPSPNTVRFTLSHPDATFLATLS 172
           F  +R    +  + K     + +   + +  L+K ++     TV+  L+ P+A FLA L+
Sbjct: 126 FMLERQWKESDPFFKVTSQNHSYFNDMGMPKLLKTVDRIDDYTVKIVLNQPEAPFLANLA 185

Query: 173 MGFASIYSAEYADKLLKAGTPEKLNNQPIGTGPFVFQRFQKDAVVRYRANPDYFAGKPAV 232
           M +A I S EYA  +LKAGTPEK++  PIGTGPF   ++QKDAV+R++A P Y+ GK  +
Sbjct: 186 MQYAGIQSKEYAIAMLKAGTPEKVDQDPIGTGPFYLVQYQKDAVIRFKAFPQYWGGKAKI 245

Query: 233 DPLIFAITTDANVRLQKLKRGECQVALSPKPLDIAEAGQDGNLKVATTPAFMTAFVAINS 292
           D L+FAIT DA+VR  KL++GEC V   P P D+    +D N++V   P     +++ N+
Sbjct: 246 DDLVFAITPDASVRWAKLQKGECHVMPYPNPADLDAIRKDPNVQVLEQPGLNVGYLSYNT 305

Query: 293 QHPPLDKPEVRQAINLAFDRQAYLKAVFEDSAVAANGPYPPNTWSYAKDLPGYPLDLKKA 352
              P D   VR+AIN+A +++A +  V+  + VAA  P PP  WSY   +   P D + A
Sbjct: 306 TKKPFDDVRVRKAINMAINKKAIIDGVYLTTGVAAKNPIPPTMWSYNDAVKDDPYDPEAA 365

Query: 353 KALLAKAGLAEGFSTTIWTRPSGSLLNPNPSLGAQMLQADLAKIGIKAEIRVIEWGELIR 412
           K LLA+AG  +GFST +W  P     NPN    A+++QADLAKI +KAEI+  EWGE  +
Sbjct: 366 KKLLAQAGYPDGFSTDLWAMPVQRPYNPNAKRIAELMQADLAKINVKAEIKSFEWGEYRK 425

Query: 413 RAKAGEHDLLFMGWAGDNGDPDNFLSPQFSCAAVE--SGTNFARFCDSRLDQLISAGRTT 470
           R +AGEH +  +GW GDNGDPDNFL     CA+ +  SG+N ++FC    + L+   ++T
Sbjct: 426 RLQAGEHQMGMLGWTGDNGDPDNFLYTLLGCASAKSASGSNISKFCYQPYEDLVVKAKST 485

Query: 471 NDQSVRSRLYQQAQTLIQQQALWVPLAHPTAATLLRQGVEGYQVSPFGRLDFSKVTV 527
             Q+ R  LY++AQ + ++QA W  +AH      +R+ V  +++SPFGR  F  V +
Sbjct: 486 VKQADRDALYKKAQVIFKEQAPWFTIAHAVQLKPVRKEVVDFKLSPFGRHTFYGVDI 542