Pairwise Alignments

Query, 529 a.a., periplasmic dipeptide transport protein from Pseudomonas putida KT2440

Subject, 535 a.a., dipeptide ABC transporter substrate-binding protein DppA from Escherichia coli ECRC98

 Score =  468 bits (1204), Expect = e-136
 Identities = 236/522 (45%), Positives = 326/522 (62%)

Query: 6   LSLLFTTLFAAGAAQAAPLSVCSEASPEGFDVVQYNSLTTTNATADVLMNRLVEFDAAQG 65
           L L    +  A + QA  L  CSE SPEGF+   + S TT +A++  L NRLVEF     
Sbjct: 13  LGLSLVAMTVAASVQAKTLVYCSEGSPEGFNPQLFTSGTTYDASSVPLYNRLVEFKIGTT 72

Query: 66  KVVPSLATSWTVSADGLVYDFTLRDDVKFHSTSYFKPSRKLNADDVLFSFQRMLYPAHAW 125
           +V+P LA  W VS DG  Y F LR  VK+H    FKP+R++NADDV+FSF R     + +
Sbjct: 73  EVIPGLAEKWEVSEDGKTYTFHLRKGVKWHDNKEFKPTREMNADDVVFSFDRQKNAQNPY 132

Query: 126 HKTAPGGYPHAQSLQLGSLIKAIEAPSPNTVRFTLSHPDATFLATLSMGFASIYSAEYAD 185
           HK + G Y + + + L  LI  ++    NTV+F L+ P+A FLA L+M FASI S EYAD
Sbjct: 133 HKVSGGSYEYFEGMGLPELISEVKKVDDNTVQFVLTRPEAPFLADLAMDFASILSKEYAD 192

Query: 186 KLLKAGTPEKLNNQPIGTGPFVFQRFQKDAVVRYRANPDYFAGKPAVDPLIFAITTDANV 245
            ++KAGTPEKL+  PIGTGPF  Q++QKD+ +RY+A   Y+  KP +D L+F+IT DA+V
Sbjct: 193 AMMKAGTPEKLDLNPIGTGPFQLQQYQKDSRIRYKAFDGYWGTKPQIDTLVFSITPDASV 252

Query: 246 RLQKLKRGECQVALSPKPLDIAEAGQDGNLKVATTPAFMTAFVAINSQHPPLDKPEVRQA 305
           R  KL++ ECQV   P P DIA   QD ++ +   P     +++ N Q  PLD  +VRQA
Sbjct: 253 RYAKLQKNECQVMPYPNPADIARMKQDKSINLMEMPGLNVGYLSYNVQKKPLDDVKVRQA 312

Query: 306 INLAFDRQAYLKAVFEDSAVAANGPYPPNTWSYAKDLPGYPLDLKKAKALLAKAGLAEGF 365
           +  A ++ A +KAV++ + V+A    PP  W Y  D+  Y  D +KAKALL +AGL +GF
Sbjct: 313 LTYAVNKDAIIKAVYQGAGVSAKNLIPPTMWGYNDDVQDYTYDPEKAKALLKEAGLEKGF 372

Query: 366 STTIWTRPSGSLLNPNPSLGAQMLQADLAKIGIKAEIRVIEWGELIRRAKAGEHDLLFMG 425
           S  +W  P     NPN    A+M+QAD AK+G++A+I   EWGE ++RAK GEH  + MG
Sbjct: 373 SIDLWAMPVQRPYNPNARRMAEMIQADWAKVGVQAKIVTYEWGEYLKRAKDGEHQTVMMG 432

Query: 426 WAGDNGDPDNFLSPQFSCAAVESGTNFARFCDSRLDQLISAGRTTNDQSVRSRLYQQAQT 485
           W GDNGDPDNF +  FSCAA E G+N++++C    + LI   R T+D + R  LY+QAQ 
Sbjct: 433 WTGDNGDPDNFFATLFSCAASEQGSNYSKWCYKPFEDLIQPARATDDHNKRVELYKQAQV 492

Query: 486 LIQQQALWVPLAHPTAATLLRQGVEGYQVSPFGRLDFSKVTV 527
           ++  QA  + +AH T    +R+ V+GY V P G+  F  V++
Sbjct: 493 VMHDQAPALIIAHSTVFEPVRKEVKGYVVDPLGKHHFENVSI 534