Pairwise Alignments

Query, 529 a.a., periplasmic dipeptide transport protein from Pseudomonas putida KT2440

Subject, 534 a.a., dipeptide ABC transporter substrate-binding protein from Agrobacterium fabrum C58

 Score =  432 bits (1110), Expect = e-125
 Identities = 234/535 (43%), Positives = 312/535 (58%), Gaps = 7/535 (1%)

Query: 1   MRVAALSLLFTTLFAAGAAQAAPLSV---CSEASPEGFDVVQYNSLTTTNATADVLMNRL 57
           M+    SLL  +  A  +A  A       CSEASPEGFD   Y +  T +A+A  + NRL
Sbjct: 1   MKTLTRSLLIASALAMASAMPAMAKTFVYCSEASPEGFDPSPYTAGGTFDASAHPVYNRL 60

Query: 58  VEFDAAQGKVVPSLATSWTVSADGLVYDFTLRDDVKFHSTSYFKPSRKLNADDVLFSFQR 117
            EF     +V P LA  W VS+DGL Y F LR  VKFHS   F PSR  NADDV+FS+ R
Sbjct: 61  TEFKKGTTEVEPGLAEKWDVSSDGLEYTFHLRKGVKFHSNDKFTPSRDFNADDVIFSYNR 120

Query: 118 MLYPAHAWHKTAPG-GYPHAQSLQLGSLIKAIEAPSPNTVRFTLSHPDATFLATLSMGFA 176
                + W++   G  Y +  S+++ SLIK I      TV+F L+ P+A FLA ++M FA
Sbjct: 121 QGDTKNPWNQYIAGITYEYYNSMEMPSLIKEIVKVDDYTVKFVLTRPEAPFLANIAMPFA 180

Query: 177 SIYSAEYADKLLKAGTPEKLNNQPIGTGPFVFQRFQKDAVVRYRANPDYFAGKPAVDPLI 236
           SI S EYAD L KAGT E  NN PIGTGPF F  +QKDAV+RY+ N DY+   P +D LI
Sbjct: 181 SIVSKEYADTLEKAGTKEDFNNLPIGTGPFKFVAYQKDAVIRYQKNADYWGDAPKIDDLI 240

Query: 237 FAITTDANVRLQKLKRGECQVALSPKPLDIAEAGQDGNLKVATTPAFMTAFVAINSQHPP 296
           FAIT DA VRLQKLK GEC +   P P D++    D NLK+   P    A+ A N+   P
Sbjct: 241 FAITPDAAVRLQKLKAGECHLMPYPAPADLSTIRADKNLKLDEQPGLNVAYFAYNTTVAP 300

Query: 297 LDKPEVRQAINLAFDRQAYLKAVFEDSAVAANGPYPPNTWSYAKDLPGYPLDLKKAKALL 356
            DKPEVR+A+N+A ++QA + AVF+ +   A  P PP  WSY   +     D + AK  L
Sbjct: 301 FDKPEVRKALNMAMNKQAIIDAVFQGAGTVAKNPIPPTMWSYNDSIKDDAYDPEAAKKAL 360

Query: 357 AKAGLAEGFSTTIWTRPSGSLLNPNPSLGAQMLQADLAKIGIKAEIRVIEWGELIRRAKA 416
             AG+ +  +  IW  P      PN    A+++Q+D AK+G+KAEI   EWGE ++++  
Sbjct: 361 EAAGVKD-LTMKIWAMPVQRPYMPNARRTAELIQSDFAKVGVKAEIVSFEWGEYLKKSTE 419

Query: 417 GEHD-LLFMGWAGDNGDPDNFLSPQFSCAAV-ESGTNFARFCDSRLDQLISAGRTTNDQS 474
              D  + +GW GDNGDPDNF+    SCAA  E G N A++C+    +L+S  + T D +
Sbjct: 420 VNRDGAVILGWTGDNGDPDNFMGVLLSCAATGEGGANRAQWCNKEFSELLSKAKQTTDVA 479

Query: 475 VRSRLYQQAQTLIQQQALWVPLAHPTAATLLRQGVEGYQVSPFGRLDFSKVTVTK 529
            R++LY+QAQ + ++QA W  LAH T    +   V G+ +SP G   F  V + +
Sbjct: 480 ERTKLYEQAQVIFKEQAPWATLAHSTQFVPMSAKVSGFTMSPLGDFTFENVDIAE 534