Pairwise Alignments

Query, 555 a.a., GGDEF domain protein from Pseudomonas putida KT2440

Subject, 1283 a.a., diguanylate phosphodiesterase from Pseudomonas simiae WCS417

 Score =  315 bits (808), Expect = 5e-90
 Identities = 177/440 (40%), Positives = 265/440 (60%), Gaps = 9/440 (2%)

Query: 110  VRERGVLVATLQRLAEQDPLTGIANRQGFQALLNARL--AENEGRGVALGHLDLDNFRHV 167
            + ER      + RLA  D LT + NR  FQ  L+  L  AE +   V L  LDLD F+ +
Sbjct: 834  ISERKASEQRIHRLAYYDALTHLPNRTLFQDRLHTALQAAERQKSWVVLMFLDLDRFKPI 893

Query: 168  NDALGHQSGDRLILQVVARLKHQLEAGDQLARLGSDEFALLIDTRRDA----NRAEWIAE 223
            ND+LGH +GDR++ ++  RL   +   D +AR+G DEF LL+  R +     NRA  +AE
Sbjct: 894  NDSLGHAAGDRMLKEMATRLLGCVAEDDTVARMGGDEFTLLLQPRVNREMALNRAIHVAE 953

Query: 224  RIVEALAEPYWIDGESLLLGCSLGIAHARAQSGAD--PLMWHAHIAMRQAKGSQGCTFHV 281
            +I+ +L +P+ ++G    +  S+GIA +  Q G +   LM +A  AM  AK      F  
Sbjct: 954  QILASLVKPFVLEGREFFVTASIGIALS-PQDGNELSQLMKNADTAMYHAKERGKNNFQF 1012

Query: 282  FNERINRNARSLADLESELRRALRRDELELHYQPRLNLADGRIVGLEALVRWRHAERGLL 341
            +   +N +A    +LES+LR AL ++E  L+YQP+ +    R+ G EAL+RWRH  RGL+
Sbjct: 1013 YQADMNASALERLELESDLRHALEQNEFVLYYQPQFSGDGKRLTGAEALLRWRHPRRGLV 1072

Query: 342  PPSEFVPLAEQSGLIVPLGYWVISRALRDMQALCERGLEPLHMAVNLSFRQFQDSQLLAT 401
            PP +F+P+ E+ GL+V +G WVIS A R ++   +  +    ++VN+S RQF D QL   
Sbjct: 1073 PPGDFIPVLEELGLVVDVGDWVISEACRQLKTWHQNKVRVPKVSVNISARQFSDGQLGTR 1132

Query: 402  LSRLILEHGVDARWLEFELTETAVMRRNEVVRQTMDALGRLGVRFSLDDFGTGFSSFVHL 461
            ++ ++ + G+    LE ELTE+ +MR      Q +D+L  LG+  ++DDFGTG+SS  +L
Sbjct: 1133 IATILKDTGLPPACLELELTESILMREVNEAMQILDSLKNLGLSIAVDDFGTGYSSLNYL 1192

Query: 462  NSLPITLLKVDRSFVAEMEMREENRKLVHAMINLAHNLNLEVVAEGVESEEQLTLLRGFG 521
               PI +LK+DR+FV  +   E++ ++  A+I +AH+LNL V+AEGVE+ EQL  LR  G
Sbjct: 1193 KQFPIDVLKIDRTFVDGLPSGEQDAQIARAIIAMAHSLNLAVIAEGVETHEQLDFLREHG 1252

Query: 522  CDQVQGFLVSRPLPIGELMA 541
            CD+VQG+L  RP+P     A
Sbjct: 1253 CDEVQGYLFGRPMPANRFEA 1272



 Score = 28.1 bits (61), Expect = 0.002
 Identities = 23/106 (21%), Positives = 47/106 (44%), Gaps = 4/106 (3%)

Query: 134 NRQGFQALLNARLAENEGRGVALGHLDLDNFRHVNDALGHQSGDRLILQVVARLKHQLEA 193
           N+Q +    +A LAE     +AL      N   + +        + +++ + R   +L +
Sbjct: 54  NQQQYTIDYSADLAEQISLNMALSAKIALNLLPMVEPPRDSEQQQALMRTLQRSLPELRS 113

Query: 194 GDQLARLGSDEFALLIDTRRDANRAEWIAERIVEALAEPYWIDGES 239
              LA  G    A++ D+  D+  A W+AE +  + A+ Y++   +
Sbjct: 114 IALLAPSG----AMISDSAADSQDAAWLAELVQRSRAQSYYLSNSN 155