Pairwise Alignments

Query, 420 a.a., proline-specific outer membrane porin D from Pseudomonas putida KT2440

Subject, 420 a.a., porin from Pseudomonas simiae WCS417

 Score =  202 bits (514), Expect = 2e-56
 Identities = 134/389 (34%), Positives = 201/389 (51%), Gaps = 22/389 (5%)

Query: 35  RNYFLHSDFRSPSGSGQNYRQEWAQGFIGEVRSGFTEGTVGVGIDAHGFLGLKLDGGRGH 94
           RN + + +F +P+   Q   +EW Q FI + +SG+T GTVG GID  G    KLDGG+G 
Sbjct: 44  RNAYFNRNFTNPTNP-QGKAEEWTQNFILDAKSGYTTGTVGFGIDVLGLYSQKLDGGKGT 102

Query: 95  SGTGLLPRDSDGRAESEYSSAGAALKMQLGNTQLRYGEMMVETPVFDTGDKRLHPEYATG 154
            GT LLP  SDGR    +   G ALK +L  T+L+ GE M   P+  + D R  P+   G
Sbjct: 103 GGTQLLPIHSDGRPADNFGRLGVALKTKLSKTELKVGEWMPVLPILRSDDGRSLPQTFRG 162

Query: 155 WWVENTDQPDWRLQAGRFTAFNNQDNSSTHDDF-SGYGATTHNRAISLAGATFAPNGP-F 212
             V + +     L  G+F   + ++++S  D F +G  A T +R  +  G  ++ N    
Sbjct: 163 GQVTSNEIAGLTLYGGQFRGNSPRNDASMEDMFMNGKAAFTSDR-FNFGGGEYSFNDKRT 221

Query: 213 GAALYAGQLENTWRQAYLNLNLAQ--GNWRLDGNL--YKTRDTGNASAGAIDTLAYSLLA 268
              ++  +L + ++Q Y NL  +Q  G+W L  NL  +  ++ G+A AG +D      L 
Sbjct: 222 QVGVWYAELSDIYQQQYFNLTHSQPVGDWTLGANLGFFTGKEDGSALAGDLDNKTAFALL 281

Query: 269 KYSFGAQALSVAYQKVEGDTPFDFVGGDS-IYLANAIKYADFNGPGEHSWQLRYDLNFAT 327
              +      V  QK+ GD+ +  V G S   LAN    A ++   E SWQ+R+D NF  
Sbjct: 282 SAKYNGNTFYVGLQKLTGDSVWMRVNGTSGGTLANDSYNASYDNAKEKSWQVRHDFNFVV 341

Query: 328 LGAPGLSLMGRYVSGRGIDGSHAPAGGAYVNQYGDGGKHWERDIDLKYVVQSGAAKDLSL 387
           LG PGL+LM RY+SG  +        GA  +     GK W R+ +L Y VQSGA KDL++
Sbjct: 342 LGIPGLTLMNRYISGSNVH------TGAITD-----GKEWGRESELAYTVQSGALKDLNV 390

Query: 388 SFSHVSHRANQAQAGDDIDRIYLIIEYPL 416
            + + + R +   + ++ D   L I YP+
Sbjct: 391 RWRNSTMRRD--FSNNEFDENRLFISYPI 417