Pairwise Alignments

Query, 420 a.a., proline-specific outer membrane porin D from Pseudomonas putida KT2440

Subject, 438 a.a., membrane protein from Pseudomonas simiae WCS417

 Score =  193 bits (491), Expect = 8e-54
 Identities = 143/426 (33%), Positives = 215/426 (50%), Gaps = 67/426 (15%)

Query: 31  SLLSRNYFLHSDFRSPSGSGQNYRQEWAQGFIGEVRSGFTEGTVGVGIDAHGFLGLKLDG 90
           ++ +RN ++  D+++    G+  + EW QGFIG++ SGFT+GTVGVG+D  G   ++LDG
Sbjct: 37  NIAARNAYISRDYKN----GKQDKAEWGQGFIGKLESGFTQGTVGVGVDVIGQYAIRLDG 92

Query: 91  GRGHSGTGLLP-------------RDSDGRAESEYSSAGAALKMQLGNTQLRYGEMMVET 137
           G+G +G G +               ++ G A  + +  GAA+K ++ NT L+YG+     
Sbjct: 93  GKGRAGAGGIDFFKQGNGTTNPDGSNNPGSAPHDLAKGGAAVKFRVSNTVLKYGDQFPAV 152

Query: 138 PVFDTGDKRLHPEYATGWWVENTDQPDWRLQAGRFTAFNNQDNSSTHDDFSGYGATTHNR 197
           PV    + RL  E  TG  + + +    +L AG FT    +   S     SG       +
Sbjct: 153 PVLQYDNSRLLSETYTGTSIVSKEIAGLQLDAGHFT---KEARKSMEGTDSG-----RLK 204

Query: 198 AISLAGATFAPNGPFGAALYAGQLENTWRQAYLNLNLA-----QGNWRLDGNLYKTR-DT 251
           +I   G ++       AALYA  +++  ++ Y+N+N       + +   D N YKT+ D 
Sbjct: 205 SIDYIGGSYKFTESLSAALYASDMQDVLKKQYVNVNYVLALPEKQSLTFDFNGYKTKLDR 264

Query: 252 GNA-----SAGAIDTLAYSLLAKYSFGAQALSVAYQKVEGDTPFDF----------VGGD 296
             A      A A D   +SL A ++ G  + +VA+Q+  GDT + +           GG+
Sbjct: 265 SFALENQKDADARDNKIWSLGATWAVGPHSFTVAHQRSTGDTGYLYGGYRNAGGIGDGGN 324

Query: 297 SIYLANAIKYADFNGPGEHSWQLRYDLNFATLGAPGLSLMGRYVSGRGIDGSHAPAGGAY 356
           +I LAN+  ++DFNG  E SWQL Y ++FAT G PGL+    YV G  ID          
Sbjct: 325 TILLANSY-WSDFNGKDERSWQLGYGIDFATFGVPGLTYNVAYVRGTNIDDG-------- 375

Query: 357 VNQYGDGGKHWERDI--DLKYVVQSGAAKDLSL----SFSHVSHRANQAQAGDDIDRIYL 410
               GDG    ER+I    KYVVQSG AKDLSL    S+  VS+ A+Q   G   + I L
Sbjct: 376 -TNRGDG---TEREIWNQFKYVVQSGPAKDLSLRARASWLRVSNNADQYNVGG--NEIRL 429

Query: 411 IIEYPL 416
             +YP+
Sbjct: 430 FADYPI 435