Pairwise Alignments

Query, 420 a.a., proline-specific outer membrane porin D from Pseudomonas putida KT2440

Subject, 433 a.a., outer-membrane porin D from Pseudomonas putida KT2440

 Score =  238 bits (607), Expect = 3e-67
 Identities = 148/427 (34%), Positives = 215/427 (50%), Gaps = 31/427 (7%)

Query: 8   PGRALLATLALWPALSHAEAPGW------SLLSRNYFLHSDFR---SPSGSGQNYRQEWA 58
           PGR +     L   ++ A+A G+       + +RN + + DFR   S S  G + R+EWA
Sbjct: 13  PGRRVTGLFLLCAGVN-AQAAGFLEDASAKIEARNVYFNRDFRDGYSSSSQGASKREEWA 71

Query: 59  QGFIGEVRSGFTEGTVGVGIDAHGFLGLKLDGGRGHSGTGLLPRDSDG--RAESEYSSAG 116
           QGFI  V+SG+T+G VGVG+DA G  G KLD     S +GLLP       R+  +Y+  G
Sbjct: 72  QGFILNVQSGYTQGPVGVGVDALGMFGFKLDSSPADSNSGLLPSSGHDPRRSADQYAKMG 131

Query: 117 AALKMQLGNTQLRYGEMMVETPVFDTGDKRLHPEYATGWWVENTDQPDWRLQAGRFTAFN 176
            A K+++ NT L+YG MM + P+    D RL P    G  + + +  D +    R   + 
Sbjct: 132 LAAKVKVSNTVLKYGSMMPDVPLLKYNDGRLLPTLFHGAMLTSEELHDLKFTLARLDKYT 191

Query: 177 NQDNSSTHD-----DFSGYGATTHNRAISLAGATFAPNGPFGAALYAGQLENTWRQAYLN 231
            +D++   D         Y   T      LAG  +  N  F A     +LEN +RQ +L 
Sbjct: 192 ARDSTDRQDIRVHCKNKRYACDTEADHFDLAGVDYRFNERFSAQYQVAKLENIYRQHFLG 251

Query: 232 LNLAQ----GNWRLDGNLYKTRDTGNASAGAIDTLAYSLLAKYSFGAQALSVAYQKVEGD 287
           L  +Q    G+   D  L K+ D GNA AG ID  A+S +  YS G   LS  +Q++ G+
Sbjct: 252 LVASQPLPVGSLSADMRLIKSDDIGNARAGEIDHRAFSGMLGYSLGGHKLSAGWQRMYGN 311

Query: 288 TPFDFVGGDSIYLANAIKYADFNGPGEHSWQLRYDLNFATLGAPGLSLMGRYVSGRGIDG 347
           +   ++ G + YL N  +  DF    E SWQ+RYD +F  LG PGL+   RY++G   D 
Sbjct: 312 SAMPYLDGSNPYLVNYAQVNDFAAAQERSWQVRYDYDFKALGVPGLTFFTRYING---DN 368

Query: 348 SHAPAGGAYVNQYGDGGKHWERDIDLKYVVQSGAAKDLSLSFSHVSHRANQAQAGDDIDR 407
              P            GK WERD + KY VQSG  KD+S+   + ++R+N  +   D+D 
Sbjct: 369 IKVPGSSV-------EGKEWERDTEFKYQVQSGTFKDVSVRLRNSTYRSNYERWARDMDE 421

Query: 408 IYLIIEY 414
             +I+ Y
Sbjct: 422 TRVIVSY 428