Pairwise Alignments

Query, 420 a.a., proline-specific outer membrane porin D from Pseudomonas putida KT2440

Subject, 426 a.a., putative Porin from Pseudomonas putida KT2440

 Score =  224 bits (571), Expect = 4e-63
 Identities = 141/410 (34%), Positives = 206/410 (50%), Gaps = 16/410 (3%)

Query: 10  RALLATLALWPALSHAEAP-----GWSLLSRNYFLHSDFRSPSGSGQNYRQEWAQGFIGE 64
           RA L   AL+ A   A+A        SL  RN++   DF   S + Q+ R EWAQGF+  
Sbjct: 7   RASLVLSALYCACQTAQAAFIHDGSGSLELRNFYFDRDFHGDSAT-QSRRGEWAQGFMLR 65

Query: 65  VRSGFTEGTVGVGIDAHGFLGLKLDGGRGHSGTGLLPRDSDGRAESEYSSAGAALKMQLG 124
           ++SG+T+G VG G+DA G LGLKLD     SG+GLLPR SD RA  +Y+ A A  K +L 
Sbjct: 66  LQSGYTDGVVGFGLDAAGMLGLKLDSSPDRSGSGLLPRGSDKRAADDYAKAVATFKARLA 125

Query: 125 NTQLRYGEMMVETPVFDTGDKRLHPEYATGWWVENTDQPDWRLQAGRFTAFNNQDNSSTH 184
            ++L+ G +  + P+  +   RL P++  G  + + D   +     +  A   +D++   
Sbjct: 126 QSELKAGGLSPQLPLLASNSSRLFPQWFNGVQLVSKDLDRFTFTLLQVDATKLRDSTDYE 185

Query: 185 D-----DFSGYGATTHNRAISLAGATFAPNGPFGAALYAGQLENTWRQAY----LNLNLA 235
           D         Y AT  +  +  AG  + P      +L+   LE+ +R+ +        L 
Sbjct: 186 DLTAMAQQGAYSATVTSDRLRYAGVDYQPLNNLTLSLHTSVLEDLFRRDFAGFKFKTRLG 245

Query: 236 QGNWRLDGNLYKTRDTGNASAGAIDTLAYSLLAKYSFGAQALSVAYQKVEGDTPFDFVGG 295
            G+   +   +  R+ G A  G +D    S    YS      S  YQKV GDT + +VGG
Sbjct: 246 PGDVFTEWRWFNAREQGRALLGGVDNQTLSTNFGYSVQGHTFSGGYQKVRGDTAYAYVGG 305

Query: 296 DSIYLANAIKYADFNGPGEHSWQLRYDLNFATLGAPGLSLMGRYVSGRGIDGSHAPAGGA 355
              YL +  + + F    E +W LRYD NFA +G PGL+   RYV G  +D     +   
Sbjct: 306 TDTYLFSEQQVSTFALANERAWMLRYDYNFAAVGIPGLTFNVRYVKGDQVDPQRIASVKG 365

Query: 356 YVNQYGDG-GKHWERDIDLKYVVQSGAAKDLSLSFSHVSHRANQAQAGDD 404
                GDG G+ WER  D+ YVVQSGA +++SL + + S R+N A A D+
Sbjct: 366 RALAAGDGEGREWERTTDITYVVQSGALRNVSLRWRNASMRSNFADAADE 415