Pairwise Alignments

Query, 420 a.a., proline-specific outer membrane porin D from Pseudomonas putida KT2440

Subject, 449 a.a., putative OprD family outer membrane porin from Pseudomonas putida KT2440

 Score =  260 bits (664), Expect = 7e-74
 Identities = 156/435 (35%), Positives = 237/435 (54%), Gaps = 33/435 (7%)

Query: 13  LATLALWPALSHAEAPGW------SLLSRNYFLHSDFRSP-------SGSGQNYRQEWAQ 59
           LA L   PA + ++  G+       +L+RN+F   D+R+        +G  Q+  +EW  
Sbjct: 13  LAILLASPAFADSDDEGFIDGTRVHVLNRNFFFSQDYRNGDFTLNPNNGERQSLHREWGH 72

Query: 60  GFIGEVRSGFTEGTVGVGIDAHGFLGLKLDGGRGHSGTGL-LP-------RDSDGRAESE 111
           G I  ++SGFT GTVG G+D  G +GLKLDGG G  G G+ +P        + DG  +  
Sbjct: 73  GIIANLQSGFTRGTVGFGVDVQGLVGLKLDGGNGAVGNGVGVPGIVSRSGSNFDGEPKDS 132

Query: 112 YSSAGAALKMQLGNTQLRYGEMMVETPVFDTGDKRLHPEYATGWWVENTDQPDWRLQAGR 171
           Y   G ALK++  +T+LRYG++   +PV    D RL P+   G+   N       LQ G+
Sbjct: 133 YGKVGTALKVRAFDTELRYGDVSPTSPVLHASDIRLLPQTLRGFIFNNNSLDGLSLQGGK 192

Query: 172 FTAFNNQDNSSTHDDFSGYGATTHNRA--ISLAGATFAPNGPFGAALYAGQLENTWRQAY 229
             + ++++ S+   D     A     A  +   G  +  N      L++ +L++ W Q++
Sbjct: 193 LESSSDRNASNHRGDLGTVYAGRIKGANDVVYLGGDYRFNDQLTLRLHSSRLDDVWNQSF 252

Query: 230 LNLNLAQG-----NWRLDGNLYKTRDTGNASAGAIDTLAYSLLAKYSFGAQALSVAYQKV 284
            +++  Q      + +   N Y+TRD+G A AG ID  ++S+ A  + GA    ++Y ++
Sbjct: 253 FSVDHVQPLGSELSLKTGLNYYRTRDSGQALAGQIDNDSWSVHAGLAAGAHGFKLSYTRI 312

Query: 285 EGDTPFDFVGGD-SIYLANAIKYADFNGPGEHSWQLRYDLNFATLGAPGLSLMGRYVSGR 343
           +GDTPFD+V     + L  A + +DFN P E +W+ RYD +FA LG PGLSL  RYV G 
Sbjct: 313 DGDTPFDYVWNTYDLQLDAASQVSDFNNPNERAWEARYDYDFAPLGVPGLSLTARYVRGT 372

Query: 344 GIDGSHAPAGGAYVNQYG-DGGKHWERDIDLKYVVQSGAAKDLSLSFSHVSHR-ANQAQA 401
            IDG+   AGGAY    G + G+HWER++ LKYV+QSG AKDLS +    +HR      A
Sbjct: 373 DIDGTR--AGGAYSYFNGTEDGRHWERNLWLKYVLQSGPAKDLSFNLMQATHRVGGDHVA 430

Query: 402 GDDIDRIYLIIEYPL 416
             ++D + LI++YPL
Sbjct: 431 ESNVDELRLIVQYPL 445