Pairwise Alignments

Query, 420 a.a., proline-specific outer membrane porin D from Pseudomonas putida KT2440

Subject, 417 a.a., putative Porin from Pseudomonas putida KT2440

 Score =  231 bits (589), Expect = 3e-65
 Identities = 139/389 (35%), Positives = 209/389 (53%), Gaps = 28/389 (7%)

Query: 35  RNYFLHSDFRSPSG-------SGQNYRQEWAQGFIGEVRSGFTEGTVGVGIDAHGFLGLK 87
           RN + + +FR   G       + ++ R EWAQGF+ + +SGFT+GT+G+G+DA G LG++
Sbjct: 37  RNVYFNENFRDEQGMSARAAATAKSERVEWAQGFLLDYQSGFTQGTLGLGVDAMGLLGVR 96

Query: 88  LDGGRGHSGTGLLPRDSDGRAESEYSSAGAALKMQLGNTQLRYGEMMVETPVFDTGDKRL 147
           LD GRG SGTGLLP   DGRA  E++SAG   K +LG+T +++G ++ +TPV    D RL
Sbjct: 97  LDSGRGRSGTGLLPVHDDGRAADEFASAGITAKARLGSTVVKHGTLLPKTPVLVYNDARL 156

Query: 148 HPEYATGWWVENTDQPDWRLQAGRFTAFNNQDNS-STHDDFSGYGATTHNRAISLAGATF 206
            P+   G  + +TD  +  L AG    F  +D+S ST     GYG    +   S AGA +
Sbjct: 157 LPQTYQGTQLTSTDIDNLTLTAGHLDRFKQRDSSDSTGLYLDGYGGPA-SGDFSFAGADY 215

Query: 207 APNGPFGAALYAGQLENTWRQAYL----NLNLAQGNWRLDGNLYKTRDTGNASAGAIDTL 262
           A +     + + G+LE+ +RQ +     +L L  G    D   +K+RD+G A  G ID  
Sbjct: 216 AVSKQLRLSYFHGELEHFYRQDFAGLVHDLPLGGGVLTTDLRYFKSRDSGTAYGGGIDND 275

Query: 263 AYSLLAKYSFGAQALSVAYQKVEGDTPFDFVGGDSIYLANAIKYADFNGPGEHSWQLRYD 322
            +S    Y+     +   YQ ++G+    ++ G ++Y  + +    F    E +W   Y 
Sbjct: 276 MFSGQLSYAHSGHTVGAGYQVLDGEAGLPYISGATVYSFSNVGIGKFIEEEEKTWMASYA 335

Query: 323 LNFATLGAPGLSLMGRYVSG-RGIDGSHAPAGGAYVNQYGDGGKHWERDIDLKYVVQSGA 381
            NFA  G PGL+ M RY+SG  G  G             G+G K WERD ++ YVVQ G 
Sbjct: 336 YNFAAAGVPGLTFMTRYLSGDNGRSG-------------GEGIKEWERDAEIAYVVQGGP 382

Query: 382 AKDLSLSFSHVSHRANQAQAGDDIDRIYL 410
            K L +   +  +R++ A+ G D +R+YL
Sbjct: 383 LKGLGVKLRNYVYRSDFAR-GRDSNRLYL 410